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A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks
Degree, which is the number of connections incident upon a node, measures the relative importance of the node within a network. By computing degree metrics in voxel-wise functional brain networks, many studies performed high-resolution mapping of brain network hubs using resting-state functional mag...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195315/ https://www.ncbi.nlm.nih.gov/pubmed/25352826 http://dx.doi.org/10.3389/fneur.2014.00199 |
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author | Liu, Cirong Tian, Xiaoguang |
author_facet | Liu, Cirong Tian, Xiaoguang |
author_sort | Liu, Cirong |
collection | PubMed |
description | Degree, which is the number of connections incident upon a node, measures the relative importance of the node within a network. By computing degree metrics in voxel-wise functional brain networks, many studies performed high-resolution mapping of brain network hubs using resting-state functional magnetic resonance imaging. Despite its extensive applications, defining nodes as voxels without considering the different sizes of brain regions may result in a network where the degree cannot accurately represent the importance of nodes. In this study, we designed a data-driven method to reduce this impact of the region size in degree metrics by (1) disregarding all self-connections among voxels within the same region and (2) regulating connections from voxels of other regions by the sizes of those regions. The modified method that we proposed allowed direct evaluation of the impact of the region size, showing that traditional degree metrics overestimated the degree of previous identified hubs in humans, including the visual cortex, precuneus/posterior cingulate cortex, and posterior parietal cortex, and underestimated the degree of regions including the insular cortex, anterior cingulate cortex, parahippocampus, sensory and motor cortex, and supplementary motor area. However, the locations of prominent hubs were stable even after correcting the impact. These findings were robust under different connectivity thresholds, degree metrics, data-preprocessing procedures, and datasets. In addition, our modified method improved test–retest reliability of degree metrics as well as the sensitivity in group-statistic comparisons. As a promising new tool, our method may reveal network properties that better represent true brain architecture without compromising its data-driven advantage. |
format | Online Article Text |
id | pubmed-4195315 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-41953152014-10-28 A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks Liu, Cirong Tian, Xiaoguang Front Neurol Neuroscience Degree, which is the number of connections incident upon a node, measures the relative importance of the node within a network. By computing degree metrics in voxel-wise functional brain networks, many studies performed high-resolution mapping of brain network hubs using resting-state functional magnetic resonance imaging. Despite its extensive applications, defining nodes as voxels without considering the different sizes of brain regions may result in a network where the degree cannot accurately represent the importance of nodes. In this study, we designed a data-driven method to reduce this impact of the region size in degree metrics by (1) disregarding all self-connections among voxels within the same region and (2) regulating connections from voxels of other regions by the sizes of those regions. The modified method that we proposed allowed direct evaluation of the impact of the region size, showing that traditional degree metrics overestimated the degree of previous identified hubs in humans, including the visual cortex, precuneus/posterior cingulate cortex, and posterior parietal cortex, and underestimated the degree of regions including the insular cortex, anterior cingulate cortex, parahippocampus, sensory and motor cortex, and supplementary motor area. However, the locations of prominent hubs were stable even after correcting the impact. These findings were robust under different connectivity thresholds, degree metrics, data-preprocessing procedures, and datasets. In addition, our modified method improved test–retest reliability of degree metrics as well as the sensitivity in group-statistic comparisons. As a promising new tool, our method may reveal network properties that better represent true brain architecture without compromising its data-driven advantage. Frontiers Media S.A. 2014-10-13 /pmc/articles/PMC4195315/ /pubmed/25352826 http://dx.doi.org/10.3389/fneur.2014.00199 Text en Copyright © 2014 Liu and Tian. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Liu, Cirong Tian, Xiaoguang A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title | A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title_full | A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title_fullStr | A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title_full_unstemmed | A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title_short | A Data-Driven Method to Reduce the Impact of Region Size on Degree Metrics in Voxel-Wise Functional Brain Networks |
title_sort | data-driven method to reduce the impact of region size on degree metrics in voxel-wise functional brain networks |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4195315/ https://www.ncbi.nlm.nih.gov/pubmed/25352826 http://dx.doi.org/10.3389/fneur.2014.00199 |
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