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MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy

A challenge for physiologists and neuroscientists is to map information transfer between components of the systems that they study at different scales, in order to derive important knowledge on structure and function from the analysis of the recorded dynamics. The components of physiological network...

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Detalles Bibliográficos
Autores principales: Montalto, Alessandro, Faes, Luca, Marinazzo, Daniele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196918/
https://www.ncbi.nlm.nih.gov/pubmed/25314003
http://dx.doi.org/10.1371/journal.pone.0109462
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author Montalto, Alessandro
Faes, Luca
Marinazzo, Daniele
author_facet Montalto, Alessandro
Faes, Luca
Marinazzo, Daniele
author_sort Montalto, Alessandro
collection PubMed
description A challenge for physiologists and neuroscientists is to map information transfer between components of the systems that they study at different scales, in order to derive important knowledge on structure and function from the analysis of the recorded dynamics. The components of physiological networks often interact in a nonlinear way and through mechanisms which are in general not completely known. It is then safer that the method of choice for analyzing these interactions does not rely on any model or assumption on the nature of the data and their interactions. Transfer entropy has emerged as a powerful tool to quantify directed dynamical interactions. In this paper we compare different approaches to evaluate transfer entropy, some of them already proposed, some novel, and present their implementation in a freeware MATLAB toolbox. Applications to simulated and real data are presented.
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spelling pubmed-41969182014-10-16 MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy Montalto, Alessandro Faes, Luca Marinazzo, Daniele PLoS One Research Article A challenge for physiologists and neuroscientists is to map information transfer between components of the systems that they study at different scales, in order to derive important knowledge on structure and function from the analysis of the recorded dynamics. The components of physiological networks often interact in a nonlinear way and through mechanisms which are in general not completely known. It is then safer that the method of choice for analyzing these interactions does not rely on any model or assumption on the nature of the data and their interactions. Transfer entropy has emerged as a powerful tool to quantify directed dynamical interactions. In this paper we compare different approaches to evaluate transfer entropy, some of them already proposed, some novel, and present their implementation in a freeware MATLAB toolbox. Applications to simulated and real data are presented. Public Library of Science 2014-10-14 /pmc/articles/PMC4196918/ /pubmed/25314003 http://dx.doi.org/10.1371/journal.pone.0109462 Text en © 2014 Montalto et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Montalto, Alessandro
Faes, Luca
Marinazzo, Daniele
MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title_full MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title_fullStr MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title_full_unstemmed MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title_short MuTE: A MATLAB Toolbox to Compare Established and Novel Estimators of the Multivariate Transfer Entropy
title_sort mute: a matlab toolbox to compare established and novel estimators of the multivariate transfer entropy
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196918/
https://www.ncbi.nlm.nih.gov/pubmed/25314003
http://dx.doi.org/10.1371/journal.pone.0109462
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