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A Low Dimensional Approach on Network Characterization
In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of unce...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199607/ https://www.ncbi.nlm.nih.gov/pubmed/25329146 http://dx.doi.org/10.1371/journal.pone.0109383 |
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author | Li, Benjamin Y. S. Zhan, Choujun Yeung, Lam F. Ko, King T. Yang, Genke |
author_facet | Li, Benjamin Y. S. Zhan, Choujun Yeung, Lam F. Ko, King T. Yang, Genke |
author_sort | Li, Benjamin Y. S. |
collection | PubMed |
description | In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of uncertainty. For large datasets, these algorithms are computationally intensive and inefficient. However, under the context of network mining, a major concern of some applications is speed. Hence, we are motivated to develop a fast characterization algorithm, which can be used to quickly construct a graph space for analysis purpose. Our approach is to transform a network characterization measure, commonly formulated based on similarity matrices, into simple vector form signatures. We shall show that the [Image: see text] similarity matrix can be represented by a dyadic product of two N-dimensional signature vectors; thus the network alignment process, which is usually solved as an assignment problem, can be reduced into a simple alignment problem based on separate signature vectors. |
format | Online Article Text |
id | pubmed-4199607 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41996072014-10-21 A Low Dimensional Approach on Network Characterization Li, Benjamin Y. S. Zhan, Choujun Yeung, Lam F. Ko, King T. Yang, Genke PLoS One Research Article In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of uncertainty. For large datasets, these algorithms are computationally intensive and inefficient. However, under the context of network mining, a major concern of some applications is speed. Hence, we are motivated to develop a fast characterization algorithm, which can be used to quickly construct a graph space for analysis purpose. Our approach is to transform a network characterization measure, commonly formulated based on similarity matrices, into simple vector form signatures. We shall show that the [Image: see text] similarity matrix can be represented by a dyadic product of two N-dimensional signature vectors; thus the network alignment process, which is usually solved as an assignment problem, can be reduced into a simple alignment problem based on separate signature vectors. Public Library of Science 2014-10-16 /pmc/articles/PMC4199607/ /pubmed/25329146 http://dx.doi.org/10.1371/journal.pone.0109383 Text en © 2014 Li et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Li, Benjamin Y. S. Zhan, Choujun Yeung, Lam F. Ko, King T. Yang, Genke A Low Dimensional Approach on Network Characterization |
title | A Low Dimensional Approach on Network Characterization |
title_full | A Low Dimensional Approach on Network Characterization |
title_fullStr | A Low Dimensional Approach on Network Characterization |
title_full_unstemmed | A Low Dimensional Approach on Network Characterization |
title_short | A Low Dimensional Approach on Network Characterization |
title_sort | low dimensional approach on network characterization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199607/ https://www.ncbi.nlm.nih.gov/pubmed/25329146 http://dx.doi.org/10.1371/journal.pone.0109383 |
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