Cargando…

A Low Dimensional Approach on Network Characterization

In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of unce...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Benjamin Y. S., Zhan, Choujun, Yeung, Lam F., Ko, King T., Yang, Genke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199607/
https://www.ncbi.nlm.nih.gov/pubmed/25329146
http://dx.doi.org/10.1371/journal.pone.0109383
_version_ 1782339938759475200
author Li, Benjamin Y. S.
Zhan, Choujun
Yeung, Lam F.
Ko, King T.
Yang, Genke
author_facet Li, Benjamin Y. S.
Zhan, Choujun
Yeung, Lam F.
Ko, King T.
Yang, Genke
author_sort Li, Benjamin Y. S.
collection PubMed
description In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of uncertainty. For large datasets, these algorithms are computationally intensive and inefficient. However, under the context of network mining, a major concern of some applications is speed. Hence, we are motivated to develop a fast characterization algorithm, which can be used to quickly construct a graph space for analysis purpose. Our approach is to transform a network characterization measure, commonly formulated based on similarity matrices, into simple vector form signatures. We shall show that the [Image: see text] similarity matrix can be represented by a dyadic product of two N-dimensional signature vectors; thus the network alignment process, which is usually solved as an assignment problem, can be reduced into a simple alignment problem based on separate signature vectors.
format Online
Article
Text
id pubmed-4199607
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-41996072014-10-21 A Low Dimensional Approach on Network Characterization Li, Benjamin Y. S. Zhan, Choujun Yeung, Lam F. Ko, King T. Yang, Genke PLoS One Research Article In many applications, one may need to characterize a given network among a large set of base networks, and these networks are large in size and diverse in structure over the search space. In addition, the characterization algorithms are required to have low volatility and with a small circle of uncertainty. For large datasets, these algorithms are computationally intensive and inefficient. However, under the context of network mining, a major concern of some applications is speed. Hence, we are motivated to develop a fast characterization algorithm, which can be used to quickly construct a graph space for analysis purpose. Our approach is to transform a network characterization measure, commonly formulated based on similarity matrices, into simple vector form signatures. We shall show that the [Image: see text] similarity matrix can be represented by a dyadic product of two N-dimensional signature vectors; thus the network alignment process, which is usually solved as an assignment problem, can be reduced into a simple alignment problem based on separate signature vectors. Public Library of Science 2014-10-16 /pmc/articles/PMC4199607/ /pubmed/25329146 http://dx.doi.org/10.1371/journal.pone.0109383 Text en © 2014 Li et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Li, Benjamin Y. S.
Zhan, Choujun
Yeung, Lam F.
Ko, King T.
Yang, Genke
A Low Dimensional Approach on Network Characterization
title A Low Dimensional Approach on Network Characterization
title_full A Low Dimensional Approach on Network Characterization
title_fullStr A Low Dimensional Approach on Network Characterization
title_full_unstemmed A Low Dimensional Approach on Network Characterization
title_short A Low Dimensional Approach on Network Characterization
title_sort low dimensional approach on network characterization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4199607/
https://www.ncbi.nlm.nih.gov/pubmed/25329146
http://dx.doi.org/10.1371/journal.pone.0109383
work_keys_str_mv AT libenjaminys alowdimensionalapproachonnetworkcharacterization
AT zhanchoujun alowdimensionalapproachonnetworkcharacterization
AT yeunglamf alowdimensionalapproachonnetworkcharacterization
AT kokingt alowdimensionalapproachonnetworkcharacterization
AT yanggenke alowdimensionalapproachonnetworkcharacterization
AT libenjaminys lowdimensionalapproachonnetworkcharacterization
AT zhanchoujun lowdimensionalapproachonnetworkcharacterization
AT yeunglamf lowdimensionalapproachonnetworkcharacterization
AT kokingt lowdimensionalapproachonnetworkcharacterization
AT yanggenke lowdimensionalapproachonnetworkcharacterization