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Connection-type-specific biases make uniform random network models consistent with cortical recordings

Uniform random sparse network architectures are ubiquitous in computational neuroscience, but the implicit hypothesis that they are a good representation of real neuronal networks has been met with skepticism. Here we used two experimental data sets, a study of triplet connectivity statistics and a...

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Autores principales: Tomm, Christian, Avermann, Michael, Petersen, Carl, Gerstner, Wulfram, Vogels, Tim P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Physiological Society 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200009/
https://www.ncbi.nlm.nih.gov/pubmed/24944218
http://dx.doi.org/10.1152/jn.00629.2013
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author Tomm, Christian
Avermann, Michael
Petersen, Carl
Gerstner, Wulfram
Vogels, Tim P.
author_facet Tomm, Christian
Avermann, Michael
Petersen, Carl
Gerstner, Wulfram
Vogels, Tim P.
author_sort Tomm, Christian
collection PubMed
description Uniform random sparse network architectures are ubiquitous in computational neuroscience, but the implicit hypothesis that they are a good representation of real neuronal networks has been met with skepticism. Here we used two experimental data sets, a study of triplet connectivity statistics and a data set measuring neuronal responses to channelrhodopsin stimuli, to evaluate the fidelity of thousands of model networks. Network architectures comprised three neuron types (excitatory, fast spiking, and nonfast spiking inhibitory) and were created from a set of rules that govern the statistics of the resulting connection types. In a high-dimensional parameter scan, we varied the degree distributions (i.e., how many cells each neuron connects with) and the synaptic weight correlations of synapses from or onto the same neuron. These variations converted initially uniform random and homogeneously connected networks, in which every neuron sent and received equal numbers of synapses with equal synaptic strength distributions, to highly heterogeneous networks in which the number of synapses per neuron, as well as average synaptic strength of synapses from or to a neuron were variable. By evaluating the impact of each variable on the network structure and dynamics, and their similarity to the experimental data, we could falsify the uniform random sparse connectivity hypothesis for 7 of 36 connectivity parameters, but we also confirmed the hypothesis in 8 cases. Twenty-one parameters had no substantial impact on the results of the test protocols we used.
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spelling pubmed-42000092014-10-20 Connection-type-specific biases make uniform random network models consistent with cortical recordings Tomm, Christian Avermann, Michael Petersen, Carl Gerstner, Wulfram Vogels, Tim P. J Neurophysiol Neural Circuits Uniform random sparse network architectures are ubiquitous in computational neuroscience, but the implicit hypothesis that they are a good representation of real neuronal networks has been met with skepticism. Here we used two experimental data sets, a study of triplet connectivity statistics and a data set measuring neuronal responses to channelrhodopsin stimuli, to evaluate the fidelity of thousands of model networks. Network architectures comprised three neuron types (excitatory, fast spiking, and nonfast spiking inhibitory) and were created from a set of rules that govern the statistics of the resulting connection types. In a high-dimensional parameter scan, we varied the degree distributions (i.e., how many cells each neuron connects with) and the synaptic weight correlations of synapses from or onto the same neuron. These variations converted initially uniform random and homogeneously connected networks, in which every neuron sent and received equal numbers of synapses with equal synaptic strength distributions, to highly heterogeneous networks in which the number of synapses per neuron, as well as average synaptic strength of synapses from or to a neuron were variable. By evaluating the impact of each variable on the network structure and dynamics, and their similarity to the experimental data, we could falsify the uniform random sparse connectivity hypothesis for 7 of 36 connectivity parameters, but we also confirmed the hypothesis in 8 cases. Twenty-one parameters had no substantial impact on the results of the test protocols we used. American Physiological Society 2014-06-18 2014-10-15 /pmc/articles/PMC4200009/ /pubmed/24944218 http://dx.doi.org/10.1152/jn.00629.2013 Text en Copyright © 2014 the American Physiological Society Licensed under Creative Commons Attribution CC-BY 3.0 (http://creativecommons.org/licenses/by/3.0/deed.en_US) : the American Physiological Society.
spellingShingle Neural Circuits
Tomm, Christian
Avermann, Michael
Petersen, Carl
Gerstner, Wulfram
Vogels, Tim P.
Connection-type-specific biases make uniform random network models consistent with cortical recordings
title Connection-type-specific biases make uniform random network models consistent with cortical recordings
title_full Connection-type-specific biases make uniform random network models consistent with cortical recordings
title_fullStr Connection-type-specific biases make uniform random network models consistent with cortical recordings
title_full_unstemmed Connection-type-specific biases make uniform random network models consistent with cortical recordings
title_short Connection-type-specific biases make uniform random network models consistent with cortical recordings
title_sort connection-type-specific biases make uniform random network models consistent with cortical recordings
topic Neural Circuits
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200009/
https://www.ncbi.nlm.nih.gov/pubmed/24944218
http://dx.doi.org/10.1152/jn.00629.2013
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