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Candidate gene-environment interactions in breast cancer

Gene-environment interactions have the potential to shed light on biological processes leading to disease, identify individuals for whom risk factors are most relevant, and improve the accuracy of epidemiological risk models. We review the progress that has been made in investigating gene-environmen...

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Detalles Bibliográficos
Autores principales: Fletcher, Olivia, Dudbridge, Frank
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200144/
https://www.ncbi.nlm.nih.gov/pubmed/25604189
http://dx.doi.org/10.1186/s12916-014-0195-1
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author Fletcher, Olivia
Dudbridge, Frank
author_facet Fletcher, Olivia
Dudbridge, Frank
author_sort Fletcher, Olivia
collection PubMed
description Gene-environment interactions have the potential to shed light on biological processes leading to disease, identify individuals for whom risk factors are most relevant, and improve the accuracy of epidemiological risk models. We review the progress that has been made in investigating gene-environment interactions in the field of breast cancer. Although several large-scale analyses have been carried out, only a few significant interactions have been reported. One of these, an interaction between CASP8-rs1045485 and alcohol consumption has been replicated, but others have not, including LSP1- rs3817198 and parity, and 1p11.2-rs11249433 and ever being parous. False positive interactions may arise if the gene and environment are correlated and the causal variant is less frequent than the tag SNP. We conclude that while much progress has been made in this area it is still too soon to tell whether gene-environment interactions will fulfil their promise. Before we can make this assessment we will need to replicate (or refute) the reported interactions, identify the causal variants that underlie tag-SNP associations and validate the next generation of epidemiological risk models.
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spelling pubmed-42001442014-10-18 Candidate gene-environment interactions in breast cancer Fletcher, Olivia Dudbridge, Frank BMC Med Commentary Gene-environment interactions have the potential to shed light on biological processes leading to disease, identify individuals for whom risk factors are most relevant, and improve the accuracy of epidemiological risk models. We review the progress that has been made in investigating gene-environment interactions in the field of breast cancer. Although several large-scale analyses have been carried out, only a few significant interactions have been reported. One of these, an interaction between CASP8-rs1045485 and alcohol consumption has been replicated, but others have not, including LSP1- rs3817198 and parity, and 1p11.2-rs11249433 and ever being parous. False positive interactions may arise if the gene and environment are correlated and the causal variant is less frequent than the tag SNP. We conclude that while much progress has been made in this area it is still too soon to tell whether gene-environment interactions will fulfil their promise. Before we can make this assessment we will need to replicate (or refute) the reported interactions, identify the causal variants that underlie tag-SNP associations and validate the next generation of epidemiological risk models. BioMed Central 2014-10-17 /pmc/articles/PMC4200144/ /pubmed/25604189 http://dx.doi.org/10.1186/s12916-014-0195-1 Text en © Fletcher and Dudbridge; licensee BioMed Central Ltd. 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Commentary
Fletcher, Olivia
Dudbridge, Frank
Candidate gene-environment interactions in breast cancer
title Candidate gene-environment interactions in breast cancer
title_full Candidate gene-environment interactions in breast cancer
title_fullStr Candidate gene-environment interactions in breast cancer
title_full_unstemmed Candidate gene-environment interactions in breast cancer
title_short Candidate gene-environment interactions in breast cancer
title_sort candidate gene-environment interactions in breast cancer
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200144/
https://www.ncbi.nlm.nih.gov/pubmed/25604189
http://dx.doi.org/10.1186/s12916-014-0195-1
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