Cargando…

Structure and mechanism of E. coli RNA 2′,3′-cyclic phosphodiesterase

2H (two-histidine) phosphoesterase enzymes are distributed widely in all domains of life and are implicated in diverse RNA and nucleotide transactions, including the transesterification and hydrolysis of cyclic phosphates. Here we report a biochemical and structural characterization of the Escherich...

Descripción completa

Detalles Bibliográficos
Autores principales:	Remus, Barbara S., Jacewicz, Agata, Shuman, Stewart
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2014
Materias:	Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4201822/ https://www.ncbi.nlm.nih.gov/pubmed/25239919 http://dx.doi.org/10.1261/rna.046797.114

Ejemplares similares

Structures of RNA ligase RtcB in complexes with divalent cations and GTP
por: Jacewicz, Agata, et al.
Publicado: (2022)

The sequential 2′,3′-cyclic phosphodiesterase and 3′-phosphate/5′-OH ligation steps of the RtcB RNA splicing pathway are GTP-dependent
por: Chakravarty, Anupam K., et al.
Publicado: (2012)

Characterization of the 2′,3′ cyclic phosphodiesterase activities of Clostridium thermocellum polynucleotide kinase-phosphatase and bacteriophage λ phosphatase
por: Keppetipola, Niroshika, et al.
Publicado: (2007)

Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28
por: Jacewicz, Agata, et al.
Publicado: (2014)

DNA(3′)pp(5′)G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition
por: Chauleau, Mathieu, et al.
Publicado: (2015)

Atomic structures of the RNA end-healing 5′-OH kinase and 2′,3′-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor
por: Banerjee, Ankan, et al.
Publicado: (2019)

Structure of mycobacterial 3′-to-5′ RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases
por: Ejaz, Anam, et al.
Publicado: (2018)

Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase
por: Remus, Barbara S., et al.
Publicado: (2017)

Characterization of the tRNA ligases of pathogenic fungi Aspergillus fumigatus and Coccidioides immitis
por: Remus, Barbara S., et al.
Publicado: (2016)

Mechanism of RNA 2′,3′-cyclic phosphate end healing by T4 polynucleotide kinase–phosphatase
por: Das, Ushati, et al.
Publicado: (2013)

Structural basis for recognition of intron branchpoint RNA by yeast Msl5 and selective effects of interfacial mutations on splicing of yeast pre-mRNAs
por: Jacewicz, Agata, et al.
Publicado: (2015)

Mechanistic insights into the manganese-dependent phosphodiesterase activity of yeast Dbr1 with bis-p-nitrophenylphosphate and branched RNA substrates
por: Schwer, Beate, et al.
Publicado: (2016)

Distinctive kinetics and substrate specificities of plant and fungal tRNA ligases
por: Remus, Barbara S., et al.
Publicado: (2014)

Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP•Mg(2+) and 5′-OH oligonucleotide and a product complex with GDP•Mg(2+) and 5′-PO(4) oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition
por: Das, Ushati, et al.
Publicado: (2014)

Structure–function analysis of yeast RNA debranching enzyme (Dbr1), a manganese-dependent phosphodiesterase
por: Khalid, M. Fahad, et al.
Publicado: (2005)

The Characterization of Escherichia coli CpdB as a Recombinant Protein Reveals that, besides Having the Expected 3´-Nucleotidase and 2´,3´-Cyclic Mononucleotide Phosphodiesterase Activities, It Is Also Active as Cyclic Dinucleotide Phosphodiesterase
por: López-Villamizar, Iralis, et al.
Publicado: (2016)

Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase–pyrophosphatases that act via a covalent aspartyl–phosphate intermediate
por: Sanchez, Ana M., et al.
Publicado: (2022)

Cyclic AMP compartments and signaling specificity: Role of cyclic nucleotide phosphodiesterases
por: Conti, Marco, et al.
Publicado: (2014)

Cyclic nucleotide specific phosphodiesterases of Leishmania major
por: Johner, Andrea, et al.
Publicado: (2006)

Cyclic nucleotide phosphodiesterases – 40 years of progress
por: Beavo, Joseph A, et al.
Publicado: (2009)

Role of Phosphodiesterase 5 and Cyclic GMP in Hypertension
por: Mergia, Evanthia, et al.
Publicado: (2016)

Cyclic nucleotide phosphodiesterase 1 and vascular aging
por: Yan, Chen
Publicado: (2015)

Structural basis for the evolution of cyclic phosphodiesterase activity in the U6 snRNA exoribonuclease Usb1
por: Nomura, Yuichiro, et al.
Publicado: (2020)

2’,3’-Cyclic Nucleotide 3’-Phosphodiesterases Inhibit Hepatitis B Virus Replication
por: Ma, Hui, et al.
Publicado: (2013)

The Functions of Mitochondrial 2′,3′-Cyclic Nucleotide-3′-Phosphodiesterase and Prospects for Its Future
por: Olga, Krestinina, et al.
Publicado: (2020)

Identification and characterization of phosphodiesterases that specifically degrade 3′3′-cyclic GMP-AMP
por: Gao, Juyi, et al.
Publicado: (2015)

Control of the cyclic GMP phosphodiesterase of frog photoreceptor membranes
Publicado: (1980)

Role of Cyclic Nucleotide Phosphodiesterases in Inner Ear and Hearing
por: Mittal, Rahul, et al.
Publicado: (2017)

Structure and Mechanism of E. coli Rnase
por: Zuo, Yuhong, et al.
Publicado: (2002)

2′-Phosphate cyclase activity of RtcA: a potential rationale for the operon organization of RtcA with an RNA repair ligase RtcB in Escherichia coli and other bacterial taxa
por: Das, Ushati, et al.
Publicado: (2013)

Rod outer segment structure influences the apparent kinetic parameters of cyclic GMP phosphodiesterase
Publicado: (1994)

Structural insights into the mechanism of rhodopsin phosphodiesterase
por: Ikuta, Tatsuya, et al.
Publicado: (2020)

Structure and mechanism of the 2′,3′ phosphatase component of the bacterial Pnkp-Hen1 RNA repair system
por: Wang, Li Kai, et al.
Publicado: (2013)

Phosphodiesterases Maintain Signaling Fidelity via Compartmentalization of Cyclic Nucleotides
por: Lomas, Oliver, et al.
Publicado: (2014)

Bacterial Cyclic AMP-Phosphodiesterase Activity Coordinates Biofilm Formation
por: Kalivoda, Eric J., et al.
Publicado: (2013)

Editorial: Cyclic Nucleotide Phosphodiesterases (PDEs) in Immune Regulation and Inflammation
por: Brocke, Stefan, et al.
Publicado: (2022)

Regulation of the renin-angiotensin-aldosterone system by cyclic nucleotides and phosphodiesterases
por: Gambaryan, Stepan, et al.
Publicado: (2023)

Myelin 2′,3′-Cyclic Nucleotide 3′-Phosphodiesterase: Active-Site Ligand Binding and Molecular Conformation
por: Myllykoski, Matti, et al.
Publicado: (2012)

Determinants of ligand binding and catalytic activity in the myelin enzyme 2′,3′-cyclic nucleotide 3′-phosphodiesterase
por: Raasakka, Arne, et al.
Publicado: (2015)

Mechanisms of Cyclic Nucleotide Phosphodiesterases in Modulating T Cell Responses in Murine Graft-versus-Host Disease
por: Weber, Michael, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_taannf932c1d1sv7843o3p6pi2