Cargando…
Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome
This is the first report on a complete genome sequence and biological characterization of the phage that infects Arthrobacter. A novel virus vB_ArS-ArV2 (ArV2) was isolated from soil using Arthrobacter sp. 68b strain for phage propagation. Based on transmission electron microscopy, ArV2 belongs to t...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4205034/ https://www.ncbi.nlm.nih.gov/pubmed/25333962 http://dx.doi.org/10.1371/journal.pone.0111230 |
_version_ | 1782340651000528896 |
---|---|
author | Šimoliūnas, Eugenijus Kaliniene, Laura Stasilo, Miroslav Truncaitė, Lidija Zajančkauskaitė, Aurelija Staniulis, Juozas Nainys, Juozas Kaupinis, Algirdas Valius, Mindaugas Meškys, Rolandas |
author_facet | Šimoliūnas, Eugenijus Kaliniene, Laura Stasilo, Miroslav Truncaitė, Lidija Zajančkauskaitė, Aurelija Staniulis, Juozas Nainys, Juozas Kaupinis, Algirdas Valius, Mindaugas Meškys, Rolandas |
author_sort | Šimoliūnas, Eugenijus |
collection | PubMed |
description | This is the first report on a complete genome sequence and biological characterization of the phage that infects Arthrobacter. A novel virus vB_ArS-ArV2 (ArV2) was isolated from soil using Arthrobacter sp. 68b strain for phage propagation. Based on transmission electron microscopy, ArV2 belongs to the family Siphoviridae and has an isometric head (∼63 nm in diameter) with a non-contractile flexible tail (∼194×10 nm) and six short tail fibers. ArV2 possesses a linear, double-stranded DNA genome (37,372 bp) with a G+C content of 62.73%. The genome contains 68 ORFs yet encodes no tRNA genes. A total of 28 ArV2 ORFs have no known functions and lack any reliable database matches. Proteomic analysis led to the experimental identification of 14 virion proteins, including 9 that were predicted by bioinformatics approaches. Comparative phylogenetic analysis, based on the amino acid sequence alignment of conserved proteins, set ArV2 apart from other siphoviruses. The data presented here will help to advance our understanding of Arthrobacter phage population and will extend our knowledge about the interaction between this particular host and its phages. |
format | Online Article Text |
id | pubmed-4205034 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-42050342014-10-27 Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome Šimoliūnas, Eugenijus Kaliniene, Laura Stasilo, Miroslav Truncaitė, Lidija Zajančkauskaitė, Aurelija Staniulis, Juozas Nainys, Juozas Kaupinis, Algirdas Valius, Mindaugas Meškys, Rolandas PLoS One Research Article This is the first report on a complete genome sequence and biological characterization of the phage that infects Arthrobacter. A novel virus vB_ArS-ArV2 (ArV2) was isolated from soil using Arthrobacter sp. 68b strain for phage propagation. Based on transmission electron microscopy, ArV2 belongs to the family Siphoviridae and has an isometric head (∼63 nm in diameter) with a non-contractile flexible tail (∼194×10 nm) and six short tail fibers. ArV2 possesses a linear, double-stranded DNA genome (37,372 bp) with a G+C content of 62.73%. The genome contains 68 ORFs yet encodes no tRNA genes. A total of 28 ArV2 ORFs have no known functions and lack any reliable database matches. Proteomic analysis led to the experimental identification of 14 virion proteins, including 9 that were predicted by bioinformatics approaches. Comparative phylogenetic analysis, based on the amino acid sequence alignment of conserved proteins, set ArV2 apart from other siphoviruses. The data presented here will help to advance our understanding of Arthrobacter phage population and will extend our knowledge about the interaction between this particular host and its phages. Public Library of Science 2014-10-21 /pmc/articles/PMC4205034/ /pubmed/25333962 http://dx.doi.org/10.1371/journal.pone.0111230 Text en © 2014 Šimoliūnas et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Šimoliūnas, Eugenijus Kaliniene, Laura Stasilo, Miroslav Truncaitė, Lidija Zajančkauskaitė, Aurelija Staniulis, Juozas Nainys, Juozas Kaupinis, Algirdas Valius, Mindaugas Meškys, Rolandas Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title | Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title_full | Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title_fullStr | Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title_full_unstemmed | Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title_short | Isolation and Characterization of vB_ArS-ArV2 – First Arthrobacter sp. Infecting Bacteriophage with Completely Sequenced Genome |
title_sort | isolation and characterization of vb_ars-arv2 – first arthrobacter sp. infecting bacteriophage with completely sequenced genome |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4205034/ https://www.ncbi.nlm.nih.gov/pubmed/25333962 http://dx.doi.org/10.1371/journal.pone.0111230 |
work_keys_str_mv | AT simoliunaseugenijus isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT kalinienelaura isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT stasilomiroslav isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT truncaitelidija isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT zajanckauskaiteaurelija isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT staniulisjuozas isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT nainysjuozas isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT kaupinisalgirdas isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT valiusmindaugas isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome AT meskysrolandas isolationandcharacterizationofvbarsarv2firstarthrobacterspinfectingbacteriophagewithcompletelysequencedgenome |