Cargando…

Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken

In this study, we propose an approach aiming at fine-mapping adiposity QTL in chicken, integrating whole genome re-sequencing data. First, two QTL regions for adiposity were identified by performing a classical linkage analysis on 1362 offspring in 11 sire families obtained by crossing two meat-type...

Descripción completa

Detalles Bibliográficos
Autores principales:	Roux, Pierre-François, Boutin, Morgane, Désert, Colette, Djari, Anis, Esquerré, Diane, Klopp, Christophe, Lagarrigue, Sandrine, Demeure, Olivier
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4205046/ https://www.ncbi.nlm.nih.gov/pubmed/25333370 http://dx.doi.org/10.1371/journal.pone.0111299

Ejemplares similares

Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation
por: Roux, Pierre-François, et al.
Publicado: (2015)

The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
por: Roux, Pierre-François, et al.
Publicado: (2015)

Long noncoding RNA repertoire in chicken liver and adipose tissue
por: Muret, Kévin, et al.
Publicado: (2017)

Complex trait subtypes identification using transcriptome profiling reveals an interaction between two QTL affecting adiposity in chicken
por: Blum, Yuna, et al.
Publicado: (2011)

Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates
por: Frésard, Laure, et al.
Publicado: (2015)

Using transcriptome profiling to characterize QTL regions on chicken chromosome 5
por: Le Mignon, Guillaume, et al.
Publicado: (2009)

An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
por: Jehl, Frédéric, et al.
Publicado: (2020)

Expanding Duplication of Free Fatty Acid Receptor-2 (GPR43) Genes in the Chicken Genome
por: Meslin, Camille, et al.
Publicado: (2015)

Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues
por: Jehl, Frédéric, et al.
Publicado: (2021)

Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species
por: Muret, Kevin, et al.
Publicado: (2019)

AnnotQTL: a new tool to gather functional and comparative information on a genomic region
por: Lecerf, F., et al.
Publicado: (2011)

Fatness QTL on chicken chromosome 5 and interaction with sex
por: Abasht, Behnam, et al.
Publicado: (2006)

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing
por: Djari, Anis, et al.
Publicado: (2013)

Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach
por: Jehl, F., et al.
Publicado: (2019)

Transcriptome profiling of the feeding-to-fasting transition in chicken liver
por: Désert, Colette, et al.
Publicado: (2008)

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing
por: Billerey, Coline, et al.
Publicado: (2014)

sigReannot: an oligo-set re-annotation pipeline based on similarities with the Ensembl transcripts and Unigene clusters
por: Casel, Pierrot, et al.
Publicado: (2009)

Watch Out for a Second SNP: Focus on Multi-Nucleotide Variants in Coding Regions and Rescued Stop-Gained
por: Degalez, Fabien, et al.
Publicado: (2021)

Identification of genomic regions and candidate genes for chicken meat ultimate pH by combined detection of selection signatures and QTL
por: Bihan-Duval, Elisabeth Le, et al.
Publicado: (2018)

Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color
por: Le Bihan-Duval, Elisabeth, et al.
Publicado: (2011)

Correction: Detection of a Cis eQTL Controlling BMCO1 Gene Expression Leads to the Identification of a QTG for Chicken Breast Meat Color
por: Le Bihan-Duval, Elisabeth, et al.
Publicado: (2011)

Genome-wide interval mapping using SNPs identifies new QTL for growth, body composition and several physiological variables in an F(2) intercross between fat and lean chicken lines
por: Demeure, Olivier, et al.
Publicado: (2013)

Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2
por: Fritz, Sébastien, et al.
Publicado: (2013)

Pathway results from the chicken data set using GOTM, Pathway Studio and Ingenuity softwares
por: Bonnet, Agnès, et al.
Publicado: (2009)

Identification of candidate genes and mutations in QTL regions for immune responses in chicken
por: Siwek, M., et al.
Publicado: (2015)

Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle
por: Meersseman, Cédric, et al.
Publicado: (2017)

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies
por: Cabau, Cédric, et al.
Publicado: (2017)

Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds
por: Boussaha, Mekki, et al.
Publicado: (2015)

Genetic effects of polymorphisms in candidate genes and the QTL region on chicken age at first egg
por: Xu, Haiping, et al.
Publicado: (2011)

Detection of QTL controlling digestive efficiency and anatomy of the digestive tract in chicken fed a wheat-based diet
por: Tran, Thanh-Son, et al.
Publicado: (2014)

Messenger RNA levels and transcription rates of hepatic lipogenesis genes in genetically lean and fat chickens
por: Daval, Stéphanie, et al.
Publicado: (2000)

Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens
por: Moreira, Gabriel Costa Monteiro, et al.
Publicado: (2019)

RNAbrowse: RNA-Seq De Novo Assembly Results Browser
por: Mariette, Jérôme, et al.
Publicado: (2014)

QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice
por: Yang, Xinghai, et al.
Publicado: (2017)

Multi-tissue transcriptomic study reveals the main role of liver in the chicken adaptive response to a switch in dietary energy source through the transcriptional regulation of lipogenesis
por: Desert, C., et al.
Publicado: (2018)

Leveraging allelic imbalance to refine fine-mapping for eQTL studies
por: Zou, Jennifer, et al.
Publicado: (2019)

Comparison of the analyses of the XV(th )QTLMAS common dataset II: QTL analysis
por: Demeure, Olivier, et al.
Publicado: (2012)

Using Targeted Resequencing for Identification of Candidate Genes and SNPs for a QTL Affecting the pH Value of Chicken Meat
por: Li, Xidan, et al.
Publicado: (2015)

Genetic and Targeted eQTL Mapping Reveals Strong Candidate Genes Modulating the Stress Response During Chicken Domestication
por: Fallahsharoudi, Amir, et al.
Publicado: (2016)

Identification of candidate genes and mutations in QTL regions for chicken growth using bioinformatic analysis of NGS and SNP-chip data
por: Ahsan, Muhammad, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_aphpbq3cpm3bbgcir19jdgt09k