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Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species

BACKGROUND: Glaciations were recurrent throughout the Quaternary and potentially shaped species genetic structure worldwide by affecting population dynamics. Here, we implemented a multi-model inference approach to recover the distribution dynamics and demographic history of a Neotropical savanna tr...

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Autores principales: Collevatti, Rosane G, Lima-Ribeiro, Matheus S, Terribile, Levi Carina, Guedes, Ludymila B S, Rosa, Fernanda F, Telles, Mariana P C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4205293/
https://www.ncbi.nlm.nih.gov/pubmed/25301477
http://dx.doi.org/10.1186/s12862-014-0213-0
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author Collevatti, Rosane G
Lima-Ribeiro, Matheus S
Terribile, Levi Carina
Guedes, Ludymila B S
Rosa, Fernanda F
Telles, Mariana P C
author_facet Collevatti, Rosane G
Lima-Ribeiro, Matheus S
Terribile, Levi Carina
Guedes, Ludymila B S
Rosa, Fernanda F
Telles, Mariana P C
author_sort Collevatti, Rosane G
collection PubMed
description BACKGROUND: Glaciations were recurrent throughout the Quaternary and potentially shaped species genetic structure worldwide by affecting population dynamics. Here, we implemented a multi-model inference approach to recover the distribution dynamics and demographic history of a Neotropical savanna tree, Tabebuia aurea (Bignoniaceae). Exploring different algorithms and paleoclimatic simulations, we used ecological niche modelling to generate alternative hypotheses of potential demographic changes through the last glacial cycle and estimated genetic parameters using coalescent modelling. RESULTS: Comparing predictions from demographic hypotheses with genetic parameters of modern populations, our findings revealed a likely scenario of population decline, with spatial displacement towards Northeast Brazil from the last glacial maximum to the mid-Holocene. Subsequently, populations expanded in response to the return of the climatically suitable conditions in Central-West Brazil. Nevertheless, a wide historical refugium across Central Brazil likely maintained large populations connected throughout time. The expected genetic signatures from such predicted distribution dynamics are also corroborated by spatial genetic structure observed in modern populations. CONCLUSION: By exploring uncertainties inherent in multiple working hypotheses, we have shown that multi-model inference is a fruitful and efficient approach to recover the nature, timing and geographical context of the Tabebuia aurea population dynamic in response to the Quaternary climate changes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-014-0213-0) contains supplementary material, which is available to authorized users.
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spelling pubmed-42052932014-10-23 Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species Collevatti, Rosane G Lima-Ribeiro, Matheus S Terribile, Levi Carina Guedes, Ludymila B S Rosa, Fernanda F Telles, Mariana P C BMC Evol Biol Research Article BACKGROUND: Glaciations were recurrent throughout the Quaternary and potentially shaped species genetic structure worldwide by affecting population dynamics. Here, we implemented a multi-model inference approach to recover the distribution dynamics and demographic history of a Neotropical savanna tree, Tabebuia aurea (Bignoniaceae). Exploring different algorithms and paleoclimatic simulations, we used ecological niche modelling to generate alternative hypotheses of potential demographic changes through the last glacial cycle and estimated genetic parameters using coalescent modelling. RESULTS: Comparing predictions from demographic hypotheses with genetic parameters of modern populations, our findings revealed a likely scenario of population decline, with spatial displacement towards Northeast Brazil from the last glacial maximum to the mid-Holocene. Subsequently, populations expanded in response to the return of the climatically suitable conditions in Central-West Brazil. Nevertheless, a wide historical refugium across Central Brazil likely maintained large populations connected throughout time. The expected genetic signatures from such predicted distribution dynamics are also corroborated by spatial genetic structure observed in modern populations. CONCLUSION: By exploring uncertainties inherent in multiple working hypotheses, we have shown that multi-model inference is a fruitful and efficient approach to recover the nature, timing and geographical context of the Tabebuia aurea population dynamic in response to the Quaternary climate changes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12862-014-0213-0) contains supplementary material, which is available to authorized users. BioMed Central 2014-10-11 /pmc/articles/PMC4205293/ /pubmed/25301477 http://dx.doi.org/10.1186/s12862-014-0213-0 Text en © Collevatti et al.; licensee BioMed Central Ltd. 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Collevatti, Rosane G
Lima-Ribeiro, Matheus S
Terribile, Levi Carina
Guedes, Ludymila B S
Rosa, Fernanda F
Telles, Mariana P C
Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title_full Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title_fullStr Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title_full_unstemmed Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title_short Recovering species demographic history from multi-model inference: the case of a Neotropical savanna tree species
title_sort recovering species demographic history from multi-model inference: the case of a neotropical savanna tree species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4205293/
https://www.ncbi.nlm.nih.gov/pubmed/25301477
http://dx.doi.org/10.1186/s12862-014-0213-0
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