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BFMP: A Method for Discretizing and Visualizing Pyranose Conformations

[Image: see text] We report a new classification method for pyranose ring conformations called Best-fit, Four-Membered Plane (BFMP), which describes pyranose ring conformations based on reference planes defined by four atoms. The method is able to characterize all asymmetrical and symmetrical shapes...

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Detalles Bibliográficos
Autores principales: Makeneni, Spandana, Foley, B. Lachele, Woods, Robert J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210171/
https://www.ncbi.nlm.nih.gov/pubmed/25289680
http://dx.doi.org/10.1021/ci500325b
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author Makeneni, Spandana
Foley, B. Lachele
Woods, Robert J.
author_facet Makeneni, Spandana
Foley, B. Lachele
Woods, Robert J.
author_sort Makeneni, Spandana
collection PubMed
description [Image: see text] We report a new classification method for pyranose ring conformations called Best-fit, Four-Membered Plane (BFMP), which describes pyranose ring conformations based on reference planes defined by four atoms. The method is able to characterize all asymmetrical and symmetrical shapes of a pyran ring, is readily automated, easy to interpret, and maps trivially to IUPAC definitions. It also provides a qualitative measurement of the distortion of the ring. Example applications include the analysis of data from crystal structures and molecular dynamics simulations.
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spelling pubmed-42101712015-10-07 BFMP: A Method for Discretizing and Visualizing Pyranose Conformations Makeneni, Spandana Foley, B. Lachele Woods, Robert J. J Chem Inf Model [Image: see text] We report a new classification method for pyranose ring conformations called Best-fit, Four-Membered Plane (BFMP), which describes pyranose ring conformations based on reference planes defined by four atoms. The method is able to characterize all asymmetrical and symmetrical shapes of a pyran ring, is readily automated, easy to interpret, and maps trivially to IUPAC definitions. It also provides a qualitative measurement of the distortion of the ring. Example applications include the analysis of data from crystal structures and molecular dynamics simulations. American Chemical Society 2014-10-07 2014-10-27 /pmc/articles/PMC4210171/ /pubmed/25289680 http://dx.doi.org/10.1021/ci500325b Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle Makeneni, Spandana
Foley, B. Lachele
Woods, Robert J.
BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title_full BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title_fullStr BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title_full_unstemmed BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title_short BFMP: A Method for Discretizing and Visualizing Pyranose Conformations
title_sort bfmp: a method for discretizing and visualizing pyranose conformations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4210171/
https://www.ncbi.nlm.nih.gov/pubmed/25289680
http://dx.doi.org/10.1021/ci500325b
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