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Automatic Evidence Retrieval for Systematic Reviews

BACKGROUND: Snowballing involves recursively pursuing relevant references cited in the retrieved literature and adding them to the search results. Snowballing is an alternative approach to discover additional evidence that was not retrieved through conventional search. Snowballing’s effectiveness ma...

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Detalles Bibliográficos
Autores principales: Choong, Miew Keen, Galgani, Filippo, Dunn, Adam G, Tsafnat, Guy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JMIR Publications Inc. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211030/
https://www.ncbi.nlm.nih.gov/pubmed/25274020
http://dx.doi.org/10.2196/jmir.3369
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author Choong, Miew Keen
Galgani, Filippo
Dunn, Adam G
Tsafnat, Guy
author_facet Choong, Miew Keen
Galgani, Filippo
Dunn, Adam G
Tsafnat, Guy
author_sort Choong, Miew Keen
collection PubMed
description BACKGROUND: Snowballing involves recursively pursuing relevant references cited in the retrieved literature and adding them to the search results. Snowballing is an alternative approach to discover additional evidence that was not retrieved through conventional search. Snowballing’s effectiveness makes it best practice in systematic reviews despite being time-consuming and tedious. OBJECTIVE: Our goal was to evaluate an automatic method for citation snowballing’s capacity to identify and retrieve the full text and/or abstracts of cited articles. METHODS: Using 20 review articles that contained 949 citations to journal or conference articles, we manually searched Microsoft Academic Search (MAS) and identified 78.0% (740/949) of the cited articles that were present in the database. We compared the performance of the automatic citation snowballing method against the results of this manual search, measuring precision, recall, and F(1) score. RESULTS: The automatic method was able to correctly identify 633 (as proportion of included citations: recall=66.7%, F(1) score=79.3%; as proportion of citations in MAS: recall=85.5%, F(1) score=91.2%) of citations with high precision (97.7%), and retrieved the full text or abstract for 490 (recall=82.9%, precision=92.1%, F(1) score=87.3%) of the 633 correctly retrieved citations. CONCLUSIONS: The proposed method for automatic citation snowballing is accurate and is capable of obtaining the full texts or abstracts for a substantial proportion of the scholarly citations in review articles. By automating the process of citation snowballing, it may be possible to reduce the time and effort of common evidence surveillance tasks such as keeping trial registries up to date and conducting systematic reviews.
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spelling pubmed-42110302014-10-29 Automatic Evidence Retrieval for Systematic Reviews Choong, Miew Keen Galgani, Filippo Dunn, Adam G Tsafnat, Guy J Med Internet Res Original Paper BACKGROUND: Snowballing involves recursively pursuing relevant references cited in the retrieved literature and adding them to the search results. Snowballing is an alternative approach to discover additional evidence that was not retrieved through conventional search. Snowballing’s effectiveness makes it best practice in systematic reviews despite being time-consuming and tedious. OBJECTIVE: Our goal was to evaluate an automatic method for citation snowballing’s capacity to identify and retrieve the full text and/or abstracts of cited articles. METHODS: Using 20 review articles that contained 949 citations to journal or conference articles, we manually searched Microsoft Academic Search (MAS) and identified 78.0% (740/949) of the cited articles that were present in the database. We compared the performance of the automatic citation snowballing method against the results of this manual search, measuring precision, recall, and F(1) score. RESULTS: The automatic method was able to correctly identify 633 (as proportion of included citations: recall=66.7%, F(1) score=79.3%; as proportion of citations in MAS: recall=85.5%, F(1) score=91.2%) of citations with high precision (97.7%), and retrieved the full text or abstract for 490 (recall=82.9%, precision=92.1%, F(1) score=87.3%) of the 633 correctly retrieved citations. CONCLUSIONS: The proposed method for automatic citation snowballing is accurate and is capable of obtaining the full texts or abstracts for a substantial proportion of the scholarly citations in review articles. By automating the process of citation snowballing, it may be possible to reduce the time and effort of common evidence surveillance tasks such as keeping trial registries up to date and conducting systematic reviews. JMIR Publications Inc. 2014-10-01 /pmc/articles/PMC4211030/ /pubmed/25274020 http://dx.doi.org/10.2196/jmir.3369 Text en ©Miew Keen Choong, Filippo Galgani, Adam G Dunn, Guy Tsafnat. Originally published in the Journal of Medical Internet Research (http://www.jmir.org), 01.10.2014. http://creativecommons.org/licenses/by/2.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in the Journal of Medical Internet Research, is properly cited. The complete bibliographic information, a link to the original publication on http://www.jmir.org/, as well as this copyright and license information must be included.
spellingShingle Original Paper
Choong, Miew Keen
Galgani, Filippo
Dunn, Adam G
Tsafnat, Guy
Automatic Evidence Retrieval for Systematic Reviews
title Automatic Evidence Retrieval for Systematic Reviews
title_full Automatic Evidence Retrieval for Systematic Reviews
title_fullStr Automatic Evidence Retrieval for Systematic Reviews
title_full_unstemmed Automatic Evidence Retrieval for Systematic Reviews
title_short Automatic Evidence Retrieval for Systematic Reviews
title_sort automatic evidence retrieval for systematic reviews
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211030/
https://www.ncbi.nlm.nih.gov/pubmed/25274020
http://dx.doi.org/10.2196/jmir.3369
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