Cargando…

Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt

X-ray diffraction data were obtained at the National Synchrotron Light Source from insulin and lysozyme crystals that were densely deposited on three types of surfaces suitable for serial micro-crystallography: MiTeGen MicroMeshes™, Greiner Bio-One Ltd in situ micro-plates, and a moving kapton cryst...

Descripción completa

Detalles Bibliográficos
Autores principales: Soares, Alexei S., Mullen, Jeffrey D., Parekh, Ruchi M., McCarthy, Grace S., Roessler, Christian G., Jackimowicz, Rick, Skinner, John M., Orville, Allen M., Allaire, Marc, Sweet, Robert M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211130/
https://www.ncbi.nlm.nih.gov/pubmed/25343789
http://dx.doi.org/10.1107/S1600577514017731
_version_ 1782341515917393920
author Soares, Alexei S.
Mullen, Jeffrey D.
Parekh, Ruchi M.
McCarthy, Grace S.
Roessler, Christian G.
Jackimowicz, Rick
Skinner, John M.
Orville, Allen M.
Allaire, Marc
Sweet, Robert M.
author_facet Soares, Alexei S.
Mullen, Jeffrey D.
Parekh, Ruchi M.
McCarthy, Grace S.
Roessler, Christian G.
Jackimowicz, Rick
Skinner, John M.
Orville, Allen M.
Allaire, Marc
Sweet, Robert M.
author_sort Soares, Alexei S.
collection PubMed
description X-ray diffraction data were obtained at the National Synchrotron Light Source from insulin and lysozyme crystals that were densely deposited on three types of surfaces suitable for serial micro-crystallography: MiTeGen MicroMeshes™, Greiner Bio-One Ltd in situ micro-plates, and a moving kapton crystal conveyor belt that is used to deliver crystals directly into the X-ray beam. 6° wedges of data were taken from ∼100 crystals mounted on each material, and these individual data sets were merged to form nine complete data sets (six from insulin crystals and three from lysozyme crystals). Insulin crystals have a parallelepiped habit with an extended flat face that preferentially aligned with the mounting surfaces, impacting the data collection strategy and the design of the serial crystallography apparatus. Lysozyme crystals had a cuboidal habit and showed no preferential orientation. Preferential orientation occluded regions of reciprocal space when the X-ray beam was incident normal to the data-collection medium surface, requiring a second pass of data collection with the apparatus inclined away from the orthogonal. In addition, crystals measuring less than 20 µm were observed to clump together into clusters of crystals. Clustering required that the X-ray beam be adjusted to match the crystal size to prevent overlapping diffraction patterns. No additional problems were encountered with the serial crystallography strategy of combining small randomly oriented wedges of data from a large number of specimens. High-quality data able to support a realistic molecular replacement solution were readily obtained from both crystal types using all three serial crystallography strategies.
format Online
Article
Text
id pubmed-4211130
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher International Union of Crystallography
record_format MEDLINE/PubMed
spelling pubmed-42111302014-11-03 Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt Soares, Alexei S. Mullen, Jeffrey D. Parekh, Ruchi M. McCarthy, Grace S. Roessler, Christian G. Jackimowicz, Rick Skinner, John M. Orville, Allen M. Allaire, Marc Sweet, Robert M. J Synchrotron Radiat Research Papers X-ray diffraction data were obtained at the National Synchrotron Light Source from insulin and lysozyme crystals that were densely deposited on three types of surfaces suitable for serial micro-crystallography: MiTeGen MicroMeshes™, Greiner Bio-One Ltd in situ micro-plates, and a moving kapton crystal conveyor belt that is used to deliver crystals directly into the X-ray beam. 6° wedges of data were taken from ∼100 crystals mounted on each material, and these individual data sets were merged to form nine complete data sets (six from insulin crystals and three from lysozyme crystals). Insulin crystals have a parallelepiped habit with an extended flat face that preferentially aligned with the mounting surfaces, impacting the data collection strategy and the design of the serial crystallography apparatus. Lysozyme crystals had a cuboidal habit and showed no preferential orientation. Preferential orientation occluded regions of reciprocal space when the X-ray beam was incident normal to the data-collection medium surface, requiring a second pass of data collection with the apparatus inclined away from the orthogonal. In addition, crystals measuring less than 20 µm were observed to clump together into clusters of crystals. Clustering required that the X-ray beam be adjusted to match the crystal size to prevent overlapping diffraction patterns. No additional problems were encountered with the serial crystallography strategy of combining small randomly oriented wedges of data from a large number of specimens. High-quality data able to support a realistic molecular replacement solution were readily obtained from both crystal types using all three serial crystallography strategies. International Union of Crystallography 2014-10-09 /pmc/articles/PMC4211130/ /pubmed/25343789 http://dx.doi.org/10.1107/S1600577514017731 Text en © Alexei S. Soares et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Soares, Alexei S.
Mullen, Jeffrey D.
Parekh, Ruchi M.
McCarthy, Grace S.
Roessler, Christian G.
Jackimowicz, Rick
Skinner, John M.
Orville, Allen M.
Allaire, Marc
Sweet, Robert M.
Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title_full Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title_fullStr Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title_full_unstemmed Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title_short Solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
title_sort solvent minimization induces preferential orientation and crystal clustering in serial micro-crystallography on micro-meshes, in situ plates and on a movable crystal conveyor belt
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4211130/
https://www.ncbi.nlm.nih.gov/pubmed/25343789
http://dx.doi.org/10.1107/S1600577514017731
work_keys_str_mv AT soaresalexeis solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT mullenjeffreyd solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT parekhruchim solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT mccarthygraces solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT roesslerchristiang solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT jackimowiczrick solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT skinnerjohnm solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT orvilleallenm solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT allairemarc solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt
AT sweetrobertm solventminimizationinducespreferentialorientationandcrystalclusteringinserialmicrocrystallographyonmicromeshesinsituplatesandonamovablecrystalconveyorbelt