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Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals
In light of global reef decline new methods to accurately, cheaply, and quickly evaluate coral metabolic states are needed to assess reef health. Metabolomic profiling can describe the response of individuals to disturbance (i.e., shifts in environmental conditions) across biological models and is a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213140/ https://www.ncbi.nlm.nih.gov/pubmed/25354140 http://dx.doi.org/10.1371/journal.pone.0111274 |
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author | Sogin, Emilia M. Anderson, Paul Williams, Philip Chen, Chii-Shiarng Gates, Ruth D. |
author_facet | Sogin, Emilia M. Anderson, Paul Williams, Philip Chen, Chii-Shiarng Gates, Ruth D. |
author_sort | Sogin, Emilia M. |
collection | PubMed |
description | In light of global reef decline new methods to accurately, cheaply, and quickly evaluate coral metabolic states are needed to assess reef health. Metabolomic profiling can describe the response of individuals to disturbance (i.e., shifts in environmental conditions) across biological models and is a powerful approach for characterizing and comparing coral metabolism. For the first time, we assess the utility of a proton-nuclear magnetic resonance spectroscopy ((1)H-NMR)-based metabolomics approach in characterizing coral metabolite profiles by 1) investigating technical, intra-, and inter-sample variation, 2) evaluating the ability to recover targeted metabolite spikes, and 3) assessing the potential for this method to differentiate among coral species. Our results indicate (1)H-NMR profiling of Porites compressa corals is highly reproducible and exhibits low levels of variability within and among colonies. The spiking experiments validate the sensitivity of our methods and showcase the capacity of orthogonal partial least squares discriminate analysis (OPLS-DA) to distinguish between profiles spiked with varying metabolite concentrations (0 mM, 0.1 mM, and 10 mM). Finally, (1)H-NMR metabolomics coupled with OPLS-DA, revealed species-specific patterns in metabolite profiles among four reef-building corals (Pocillopora damicornis, Porites lobata, Montipora aequituberculata, and Seriatopora hystrix). Collectively, these data indicate that (1)H-NMR metabolomic techniques can profile reef-building coral metabolomes and have the potential to provide an integrated picture of the coral phenotype in response to environmental change. |
format | Online Article Text |
id | pubmed-4213140 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-42131402014-11-05 Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals Sogin, Emilia M. Anderson, Paul Williams, Philip Chen, Chii-Shiarng Gates, Ruth D. PLoS One Research Article In light of global reef decline new methods to accurately, cheaply, and quickly evaluate coral metabolic states are needed to assess reef health. Metabolomic profiling can describe the response of individuals to disturbance (i.e., shifts in environmental conditions) across biological models and is a powerful approach for characterizing and comparing coral metabolism. For the first time, we assess the utility of a proton-nuclear magnetic resonance spectroscopy ((1)H-NMR)-based metabolomics approach in characterizing coral metabolite profiles by 1) investigating technical, intra-, and inter-sample variation, 2) evaluating the ability to recover targeted metabolite spikes, and 3) assessing the potential for this method to differentiate among coral species. Our results indicate (1)H-NMR profiling of Porites compressa corals is highly reproducible and exhibits low levels of variability within and among colonies. The spiking experiments validate the sensitivity of our methods and showcase the capacity of orthogonal partial least squares discriminate analysis (OPLS-DA) to distinguish between profiles spiked with varying metabolite concentrations (0 mM, 0.1 mM, and 10 mM). Finally, (1)H-NMR metabolomics coupled with OPLS-DA, revealed species-specific patterns in metabolite profiles among four reef-building corals (Pocillopora damicornis, Porites lobata, Montipora aequituberculata, and Seriatopora hystrix). Collectively, these data indicate that (1)H-NMR metabolomic techniques can profile reef-building coral metabolomes and have the potential to provide an integrated picture of the coral phenotype in response to environmental change. Public Library of Science 2014-10-29 /pmc/articles/PMC4213140/ /pubmed/25354140 http://dx.doi.org/10.1371/journal.pone.0111274 Text en © 2014 Sogin et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Sogin, Emilia M. Anderson, Paul Williams, Philip Chen, Chii-Shiarng Gates, Ruth D. Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title | Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title_full | Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title_fullStr | Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title_full_unstemmed | Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title_short | Application of (1)H-NMR Metabolomic Profiling for Reef-Building Corals |
title_sort | application of (1)h-nmr metabolomic profiling for reef-building corals |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213140/ https://www.ncbi.nlm.nih.gov/pubmed/25354140 http://dx.doi.org/10.1371/journal.pone.0111274 |
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