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A phenomenological density-scaling approach to lamellipodial actin dynamics(†)
The integration of protein function studied in vitro in a dynamic system like the cell lamellipodium remains a significant challenge. One reason is the apparent contradictory effect that perturbations of some proteins can have on the overall lamellipodium dynamics, depending on exact conditions. The...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213442/ https://www.ncbi.nlm.nih.gov/pubmed/25485077 http://dx.doi.org/10.1098/rsfs.2014.0006 |
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author | Lewalle, Alexandre Fritzsche, Marco Wilson, Kerry Thorogate, Richard Duke, Tom Charras, Guillaume |
author_facet | Lewalle, Alexandre Fritzsche, Marco Wilson, Kerry Thorogate, Richard Duke, Tom Charras, Guillaume |
author_sort | Lewalle, Alexandre |
collection | PubMed |
description | The integration of protein function studied in vitro in a dynamic system like the cell lamellipodium remains a significant challenge. One reason is the apparent contradictory effect that perturbations of some proteins can have on the overall lamellipodium dynamics, depending on exact conditions. Theoretical modelling offers one approach for understanding the balance between the mechanisms that drive and regulate actin network growth and decay. Most models use a ‘bottom-up’ approach, involving explicitly assembling biochemical components to simulate observable behaviour. Their correctness therefore relies on both the accurate characterization of all the components and the completeness of the relevant processes involved. To avoid potential pitfalls due to this uncertainty, we used an alternative ‘top-down’ approach, in which measurable features of lamellipodium behaviour, here observed in two different cell types (HL60 and B16-F1), directly inform the development of a simple phenomenological model of lamellipodium dynamics. We show that the kinetics of F-actin association and dissociation scales with the local F-actin density, with no explicit location dependence. This justifies the use of a simplified kinetic model of lamellipodium dynamics that yields predictions testable by pharmacological or genetic intervention. A length-scale parameter (the lamellipodium width) emerges from this analysis as an experimentally accessible probe of network regulatory processes. |
format | Online Article Text |
id | pubmed-4213442 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-42134422014-12-06 A phenomenological density-scaling approach to lamellipodial actin dynamics(†) Lewalle, Alexandre Fritzsche, Marco Wilson, Kerry Thorogate, Richard Duke, Tom Charras, Guillaume Interface Focus Articles The integration of protein function studied in vitro in a dynamic system like the cell lamellipodium remains a significant challenge. One reason is the apparent contradictory effect that perturbations of some proteins can have on the overall lamellipodium dynamics, depending on exact conditions. Theoretical modelling offers one approach for understanding the balance between the mechanisms that drive and regulate actin network growth and decay. Most models use a ‘bottom-up’ approach, involving explicitly assembling biochemical components to simulate observable behaviour. Their correctness therefore relies on both the accurate characterization of all the components and the completeness of the relevant processes involved. To avoid potential pitfalls due to this uncertainty, we used an alternative ‘top-down’ approach, in which measurable features of lamellipodium behaviour, here observed in two different cell types (HL60 and B16-F1), directly inform the development of a simple phenomenological model of lamellipodium dynamics. We show that the kinetics of F-actin association and dissociation scales with the local F-actin density, with no explicit location dependence. This justifies the use of a simplified kinetic model of lamellipodium dynamics that yields predictions testable by pharmacological or genetic intervention. A length-scale parameter (the lamellipodium width) emerges from this analysis as an experimentally accessible probe of network regulatory processes. The Royal Society 2014-12-06 /pmc/articles/PMC4213442/ /pubmed/25485077 http://dx.doi.org/10.1098/rsfs.2014.0006 Text en http://creativecommons.org/licenses/by/4.0/ © 2014 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Articles Lewalle, Alexandre Fritzsche, Marco Wilson, Kerry Thorogate, Richard Duke, Tom Charras, Guillaume A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title | A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title_full | A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title_fullStr | A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title_full_unstemmed | A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title_short | A phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
title_sort | phenomenological density-scaling approach to lamellipodial actin dynamics(†) |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213442/ https://www.ncbi.nlm.nih.gov/pubmed/25485077 http://dx.doi.org/10.1098/rsfs.2014.0006 |
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