Cargando…

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

Even as the study of plant genomics rapidly develops through the use of high-throughput sequencing techniques, traditional plant phenotyping lags far behind. Here we develop a high-throughput rice phenotyping facility (HRPF) to monitor 13 traditional agronomic traits and 2 newly defined traits durin...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yang, Wanneng, Guo, Zilong, Huang, Chenglong, Duan, Lingfeng, Chen, Guoxing, Jiang, Ni, Fang, Wei, Feng, Hui, Xie, Weibo, Lian, Xingming, Wang, Gongwei, Luo, Qingming, Zhang, Qifa, Liu, Qian, Xiong, Lizhong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Pub. Group 2014
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214417/ https://www.ncbi.nlm.nih.gov/pubmed/25295980 http://dx.doi.org/10.1038/ncomms6087

Ejemplares similares

An integrated hyperspectral imaging and genome-wide association analysis platform provides spectral and genetic insights into the natural variation in rice
por: Feng, Hui, et al.
Publicado: (2017)

Genome-wide association study of rice (Oryza sativa L.) leaf traits with a high-throughput leaf scorer
por: Yang, Wanneng, et al.
Publicado: (2015)

RiceVarMap: a comprehensive database of rice genomic variations
por: Zhao, Hu, et al.
Publicado: (2014)

Field rice panicle detection and counting based on deep learning
por: Wang, Xinyi, et al.
Publicado: (2022)

Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice
por: Wu, Di, et al.
Publicado: (2019)

Panicle-SEG: a robust image segmentation method for rice panicles in the field based on deep learning and superpixel optimization
por: Xiong, Xiong, et al.
Publicado: (2017)

A novel machine-vision-based facility for the automatic evaluation of yield-related traits in rice
por: Duan, Lingfeng, et al.
Publicado: (2011)

Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions
por: Duan, Lingfeng, et al.
Publicado: (2018)

Accurate Digitization of the Chlorophyll Distribution of Individual Rice Leaves Using Hyperspectral Imaging and an Integrated Image Analysis Pipeline
por: Feng, Hui, et al.
Publicado: (2017)

Genome‐wide association analyses reveal the genetic basis of combining ability in rice
por: Chen, Junxiao, et al.
Publicado: (2019)

High‐throughput phenotyping accelerates the dissection of the dynamic genetic architecture of plant growth and yield improvement in rapeseed
por: Li, Haitao, et al.
Publicado: (2020)

Exploring the rice dispensable genome using a metagenome-like assembly strategy
por: Yao, Wen, et al.
Publicado: (2015)

A high-throughput stereo-imaging system for quantifying rape leaf traits during the seedling stage
por: Xiong, Xiong, et al.
Publicado: (2017)

A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits
por: Wu, Di, et al.
Publicado: (2021)

RMD: a rice mutant database for functional analysis of the rice genome
por: Zhang, Jianwei, et al.
Publicado: (2006)

Genetic Architecture of Natural Variation in Rice Nonphotochemical Quenching Capacity Revealed by Genome-Wide Association Study
por: Wang, Quanxiu, et al.
Publicado: (2017)

Nondestructive 3D Image Analysis Pipeline to Extract Rice Grain Traits Using X-Ray Computed Tomography
por: Hu, Weijuan, et al.
Publicado: (2020)

An Intelligent Rice Yield Trait Evaluation System Based on Threshed Panicle Compensation
por: Huang, Chenglong, et al.
Publicado: (2022)

Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice
por: Wu, Jinhong, et al.
Publicado: (2015)

Genome-wide association study revealed genetic variations of ABA sensitivity controlled by multiple stress-related genes in rice
por: Peng, Lei, et al.
Publicado: (2021)

Genetic analyses of lodging resistance and yield provide insights into post‐Green‐Revolution breeding in rice
por: Guo, Zilong, et al.
Publicado: (2020)

Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid
por: Wang, Jia, et al.
Publicado: (2015)

Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study
por: Li, Xiaokai, et al.
Publicado: (2017)

RICD: A rice indica cDNA database resource for rice functional genomics
por: Lu, Tingting, et al.
Publicado: (2008)

Using high-throughput multiple optical phenotyping to decipher the genetic architecture of maize drought tolerance
por: Wu, Xi, et al.
Publicado: (2021)

Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa)
por: Dong, Haijiao, et al.
Publicado: (2018)

Genome-Wide Identification of SNAC1-Targeted Genes Involved in Drought Response in Rice
por: Li, Xu, et al.
Publicado: (2019)

High-throughput phenotyping platform for analyzing drought tolerance in rice
por: Kim, Song Lim, et al.
Publicado: (2020)

Multi-functional genome-wide CRISPR system for high throughput genotype–phenotype mapping
por: Lian, Jiazhang, et al.
Publicado: (2019)

The origin of Wx (la) provides new insights into the improvement of grain quality in rice
por: Zhou, Hao, et al.
Publicado: (2021)

Phenomics‐based GWAS analysis reveals the genetic architecture for drought resistance in cotton
por: Li, Baoqi, et al.
Publicado: (2020)

Genetic Basis of Variation in Rice Seed Storage Protein (Albumin, Globulin, Prolamin, and Glutelin) Content Revealed by Genome-Wide Association Analysis
por: Chen, Pingli, et al.
Publicado: (2018)

Genome-Wide Association Analysis for Salt–Induced Phenotypic and Physiologic Responses in Rice at Seedling and Reproductive Stages
por: Chen, Gang, et al.
Publicado: (2022)

Deciphering genetic basis of developmental and agronomic traits by integrating high‐throughput optical phenotyping and genome‐wide association studies in wheat
por: Gao, Jie, et al.
Publicado: (2023)

Genome-wide patterns of copy number variation in the Chinese yak genome
por: Zhang, Xiao, et al.
Publicado: (2016)

Natural variation of DROT1 confers drought adaptation in upland rice
por: Sun, Xingming, et al.
Publicado: (2022)

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping
por: Al-Tamimi, Nadia, et al.
Publicado: (2016)

What can aerial phenotyping do and bring to us (breeders)?
por: Yang, Wanneng, et al.
Publicado: (2022)

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
por: Zhang, Jianwei, et al.
Publicado: (2016)

CropPainter: an effective and precise tool for trait-to-image crop visualization based on generative adversarial networks
por: Duan, Lingfeng, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_8buctv4n5lfqrondge2bk97hgt