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In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, w...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4218838/ https://www.ncbi.nlm.nih.gov/pubmed/25365399 http://dx.doi.org/10.1371/journal.pone.0111049 |
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author | Prakash, Om Ahmad, Ateeque Tripathi, Vinay Kumar Tandon, Sudeep Pant, Aditya Bhusan Khan, Feroz |
author_facet | Prakash, Om Ahmad, Ateeque Tripathi, Vinay Kumar Tandon, Sudeep Pant, Aditya Bhusan Khan, Feroz |
author_sort | Prakash, Om |
collection | PubMed |
description | Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, which can act with change in concentration gradient and time of incubation. This model is a function of concentration gradient, treatment hour and independent components; which calculate the percentage inhibition in combination of above three components. This model is designed to screen tetracyclic triterpenoids active against human breast cancer cell line MCF7. The model has been statistically validated, checked for applicability domain and predicted results were reconfirmed by MTT assay, for example Oenotheranstrol derivatives, OenA & B. Computational SAR, target and docking studies were performed to understand the cytotoxic mechanism of action of Oenotheranstrol compounds. The proposed in silico assay model will work for specific chemical family for which it will be optimized. This model can be used to analyze growth kinetics pattern on different human cancer cell lines for designed compounds. |
format | Online Article Text |
id | pubmed-4218838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-42188382014-11-05 In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 Prakash, Om Ahmad, Ateeque Tripathi, Vinay Kumar Tandon, Sudeep Pant, Aditya Bhusan Khan, Feroz PLoS One Research Article Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, which can act with change in concentration gradient and time of incubation. This model is a function of concentration gradient, treatment hour and independent components; which calculate the percentage inhibition in combination of above three components. This model is designed to screen tetracyclic triterpenoids active against human breast cancer cell line MCF7. The model has been statistically validated, checked for applicability domain and predicted results were reconfirmed by MTT assay, for example Oenotheranstrol derivatives, OenA & B. Computational SAR, target and docking studies were performed to understand the cytotoxic mechanism of action of Oenotheranstrol compounds. The proposed in silico assay model will work for specific chemical family for which it will be optimized. This model can be used to analyze growth kinetics pattern on different human cancer cell lines for designed compounds. Public Library of Science 2014-11-03 /pmc/articles/PMC4218838/ /pubmed/25365399 http://dx.doi.org/10.1371/journal.pone.0111049 Text en © 2014 Prakash et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Prakash, Om Ahmad, Ateeque Tripathi, Vinay Kumar Tandon, Sudeep Pant, Aditya Bhusan Khan, Feroz In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title |
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title_full |
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title_fullStr |
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title_full_unstemmed |
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title_short |
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 |
title_sort | in silico assay development for screening of tetracyclic triterpenoids as anticancer agents against human breast cancer cell line mcf7 |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4218838/ https://www.ncbi.nlm.nih.gov/pubmed/25365399 http://dx.doi.org/10.1371/journal.pone.0111049 |
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