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In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7

Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, w...

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Autores principales: Prakash, Om, Ahmad, Ateeque, Tripathi, Vinay Kumar, Tandon, Sudeep, Pant, Aditya Bhusan, Khan, Feroz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4218838/
https://www.ncbi.nlm.nih.gov/pubmed/25365399
http://dx.doi.org/10.1371/journal.pone.0111049
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author Prakash, Om
Ahmad, Ateeque
Tripathi, Vinay Kumar
Tandon, Sudeep
Pant, Aditya Bhusan
Khan, Feroz
author_facet Prakash, Om
Ahmad, Ateeque
Tripathi, Vinay Kumar
Tandon, Sudeep
Pant, Aditya Bhusan
Khan, Feroz
author_sort Prakash, Om
collection PubMed
description Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, which can act with change in concentration gradient and time of incubation. This model is a function of concentration gradient, treatment hour and independent components; which calculate the percentage inhibition in combination of above three components. This model is designed to screen tetracyclic triterpenoids active against human breast cancer cell line MCF7. The model has been statistically validated, checked for applicability domain and predicted results were reconfirmed by MTT assay, for example Oenotheranstrol derivatives, OenA & B. Computational SAR, target and docking studies were performed to understand the cytotoxic mechanism of action of Oenotheranstrol compounds. The proposed in silico assay model will work for specific chemical family for which it will be optimized. This model can be used to analyze growth kinetics pattern on different human cancer cell lines for designed compounds.
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spelling pubmed-42188382014-11-05 In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7 Prakash, Om Ahmad, Ateeque Tripathi, Vinay Kumar Tandon, Sudeep Pant, Aditya Bhusan Khan, Feroz PLoS One Research Article Experimental activity of a compound on cancer cell line/target is mostly analyzed in the form of percentage inhibition at different concentration gradient and time of incubation. In this study a statistical model has been developed referred as in silico assay using support vector regression model, which can act with change in concentration gradient and time of incubation. This model is a function of concentration gradient, treatment hour and independent components; which calculate the percentage inhibition in combination of above three components. This model is designed to screen tetracyclic triterpenoids active against human breast cancer cell line MCF7. The model has been statistically validated, checked for applicability domain and predicted results were reconfirmed by MTT assay, for example Oenotheranstrol derivatives, OenA & B. Computational SAR, target and docking studies were performed to understand the cytotoxic mechanism of action of Oenotheranstrol compounds. The proposed in silico assay model will work for specific chemical family for which it will be optimized. This model can be used to analyze growth kinetics pattern on different human cancer cell lines for designed compounds. Public Library of Science 2014-11-03 /pmc/articles/PMC4218838/ /pubmed/25365399 http://dx.doi.org/10.1371/journal.pone.0111049 Text en © 2014 Prakash et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Prakash, Om
Ahmad, Ateeque
Tripathi, Vinay Kumar
Tandon, Sudeep
Pant, Aditya Bhusan
Khan, Feroz
In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title_full In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title_fullStr In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title_full_unstemmed In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title_short In Silico Assay Development for Screening of Tetracyclic Triterpenoids as Anticancer Agents against Human Breast Cancer Cell Line MCF7
title_sort in silico assay development for screening of tetracyclic triterpenoids as anticancer agents against human breast cancer cell line mcf7
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4218838/
https://www.ncbi.nlm.nih.gov/pubmed/25365399
http://dx.doi.org/10.1371/journal.pone.0111049
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