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DNAApp: a mobile application for sequencing data analysis

Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using brow...

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Detalles Bibliográficos
Autores principales: Nguyen, Phi-Vu, Verma, Chandra Shekhar, Gan, Samuel Ken-En
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221124/
https://www.ncbi.nlm.nih.gov/pubmed/25095882
http://dx.doi.org/10.1093/bioinformatics/btu525
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author Nguyen, Phi-Vu
Verma, Chandra Shekhar
Gan, Samuel Ken-En
author_facet Nguyen, Phi-Vu
Verma, Chandra Shekhar
Gan, Samuel Ken-En
author_sort Nguyen, Phi-Vu
collection PubMed
description Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using browser accessed Web tools. To overcome this hurdle, we have developed a new native app called DNAApp that can decode and display ab1 sequencing file on Android and iOS. In addition to in-built analysis tools such as reverse complementation, protein translation and searching for specific sequences, we have incorporated convenient functions that would facilitate the harnessing of online Web tools for a full range of analysis. Given the high usage of Android/iOS tablets and smartphones, such bioinformatics apps would raise productivity and facilitate the high demand for analyzing sequencing data in biomedical research. Availability and implementation: The Android version of DNAApp is available in Google Play Store as ‘DNAApp’, and the iOS version is available in the App Store. More details on the app can be found at www.facebook.com/APDLab; www.bii.a-star.edu.sg/research/trd/apd.php The DNAApp user guide is available at http://tinyurl.com/DNAAppuser, and a video tutorial is available on Google Play Store and App Store, as well as on the Facebook page. Contact: samuelg@bii.a-star.edu.sg
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spelling pubmed-42211242014-11-10 DNAApp: a mobile application for sequencing data analysis Nguyen, Phi-Vu Verma, Chandra Shekhar Gan, Samuel Ken-En Bioinformatics Applications Notes Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using browser accessed Web tools. To overcome this hurdle, we have developed a new native app called DNAApp that can decode and display ab1 sequencing file on Android and iOS. In addition to in-built analysis tools such as reverse complementation, protein translation and searching for specific sequences, we have incorporated convenient functions that would facilitate the harnessing of online Web tools for a full range of analysis. Given the high usage of Android/iOS tablets and smartphones, such bioinformatics apps would raise productivity and facilitate the high demand for analyzing sequencing data in biomedical research. Availability and implementation: The Android version of DNAApp is available in Google Play Store as ‘DNAApp’, and the iOS version is available in the App Store. More details on the app can be found at www.facebook.com/APDLab; www.bii.a-star.edu.sg/research/trd/apd.php The DNAApp user guide is available at http://tinyurl.com/DNAAppuser, and a video tutorial is available on Google Play Store and App Store, as well as on the Facebook page. Contact: samuelg@bii.a-star.edu.sg Oxford University Press 2014-11-15 2014-08-05 /pmc/articles/PMC4221124/ /pubmed/25095882 http://dx.doi.org/10.1093/bioinformatics/btu525 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Nguyen, Phi-Vu
Verma, Chandra Shekhar
Gan, Samuel Ken-En
DNAApp: a mobile application for sequencing data analysis
title DNAApp: a mobile application for sequencing data analysis
title_full DNAApp: a mobile application for sequencing data analysis
title_fullStr DNAApp: a mobile application for sequencing data analysis
title_full_unstemmed DNAApp: a mobile application for sequencing data analysis
title_short DNAApp: a mobile application for sequencing data analysis
title_sort dnaapp: a mobile application for sequencing data analysis
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221124/
https://www.ncbi.nlm.nih.gov/pubmed/25095882
http://dx.doi.org/10.1093/bioinformatics/btu525
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