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DNAApp: a mobile application for sequencing data analysis
Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using brow...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221124/ https://www.ncbi.nlm.nih.gov/pubmed/25095882 http://dx.doi.org/10.1093/bioinformatics/btu525 |
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author | Nguyen, Phi-Vu Verma, Chandra Shekhar Gan, Samuel Ken-En |
author_facet | Nguyen, Phi-Vu Verma, Chandra Shekhar Gan, Samuel Ken-En |
author_sort | Nguyen, Phi-Vu |
collection | PubMed |
description | Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using browser accessed Web tools. To overcome this hurdle, we have developed a new native app called DNAApp that can decode and display ab1 sequencing file on Android and iOS. In addition to in-built analysis tools such as reverse complementation, protein translation and searching for specific sequences, we have incorporated convenient functions that would facilitate the harnessing of online Web tools for a full range of analysis. Given the high usage of Android/iOS tablets and smartphones, such bioinformatics apps would raise productivity and facilitate the high demand for analyzing sequencing data in biomedical research. Availability and implementation: The Android version of DNAApp is available in Google Play Store as ‘DNAApp’, and the iOS version is available in the App Store. More details on the app can be found at www.facebook.com/APDLab; www.bii.a-star.edu.sg/research/trd/apd.php The DNAApp user guide is available at http://tinyurl.com/DNAAppuser, and a video tutorial is available on Google Play Store and App Store, as well as on the Facebook page. Contact: samuelg@bii.a-star.edu.sg |
format | Online Article Text |
id | pubmed-4221124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-42211242014-11-10 DNAApp: a mobile application for sequencing data analysis Nguyen, Phi-Vu Verma, Chandra Shekhar Gan, Samuel Ken-En Bioinformatics Applications Notes Summary: There have been numerous applications developed for decoding and visualization of ab1 DNA sequencing files for Windows and MAC platforms, yet none exists for the increasingly popular smartphone operating systems. The ability to decode sequencing files cannot easily be carried out using browser accessed Web tools. To overcome this hurdle, we have developed a new native app called DNAApp that can decode and display ab1 sequencing file on Android and iOS. In addition to in-built analysis tools such as reverse complementation, protein translation and searching for specific sequences, we have incorporated convenient functions that would facilitate the harnessing of online Web tools for a full range of analysis. Given the high usage of Android/iOS tablets and smartphones, such bioinformatics apps would raise productivity and facilitate the high demand for analyzing sequencing data in biomedical research. Availability and implementation: The Android version of DNAApp is available in Google Play Store as ‘DNAApp’, and the iOS version is available in the App Store. More details on the app can be found at www.facebook.com/APDLab; www.bii.a-star.edu.sg/research/trd/apd.php The DNAApp user guide is available at http://tinyurl.com/DNAAppuser, and a video tutorial is available on Google Play Store and App Store, as well as on the Facebook page. Contact: samuelg@bii.a-star.edu.sg Oxford University Press 2014-11-15 2014-08-05 /pmc/articles/PMC4221124/ /pubmed/25095882 http://dx.doi.org/10.1093/bioinformatics/btu525 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Nguyen, Phi-Vu Verma, Chandra Shekhar Gan, Samuel Ken-En DNAApp: a mobile application for sequencing data analysis |
title | DNAApp: a mobile application for sequencing data analysis |
title_full | DNAApp: a mobile application for sequencing data analysis |
title_fullStr | DNAApp: a mobile application for sequencing data analysis |
title_full_unstemmed | DNAApp: a mobile application for sequencing data analysis |
title_short | DNAApp: a mobile application for sequencing data analysis |
title_sort | dnaapp: a mobile application for sequencing data analysis |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4221124/ https://www.ncbi.nlm.nih.gov/pubmed/25095882 http://dx.doi.org/10.1093/bioinformatics/btu525 |
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