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Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)

• Premise of the study: Pterospora andromedea (Ericaceae) is a mycoheterotrophic plant endemic to North America with a disjunct distribution. Eastern populations are in decline compared to western populations. Microsatellite loci will allow comparison of genetic diversity in endangered to nonthreate...

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Autores principales: Grubisha, Lisa C., Nelson, Bailey A., Dowie, Nicholas J., Miller, Steven L., Klooster, Matthew R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222545/
https://www.ncbi.nlm.nih.gov/pubmed/25383268
http://dx.doi.org/10.3732/apps.1400072
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author Grubisha, Lisa C.
Nelson, Bailey A.
Dowie, Nicholas J.
Miller, Steven L.
Klooster, Matthew R.
author_facet Grubisha, Lisa C.
Nelson, Bailey A.
Dowie, Nicholas J.
Miller, Steven L.
Klooster, Matthew R.
author_sort Grubisha, Lisa C.
collection PubMed
description • Premise of the study: Pterospora andromedea (Ericaceae) is a mycoheterotrophic plant endemic to North America with a disjunct distribution. Eastern populations are in decline compared to western populations. Microsatellite loci will allow comparison of genetic diversity in endangered to nonthreatened populations. • Methods and Results: Illumina MiSeq sequencing resulted in development of 12 polymorphic microsatellite loci from 63 perfect microsatellite loci tested. One polymorphic locus was obtained from a traditional enrichment method. These 13 loci were screened across two western and two eastern populations. For western and eastern populations, respectively, number of alleles ranged from one to 10 and one to four, and observed heterozygosity ranged from 0.000 to 0.389 and 0.000 to 0.143. • Conclusions: These are the first microsatellite loci developed for Pterospora. They will be useful in conservation efforts of the eastern populations and for examination of population genetic parameters at different geographic scales and comparison with mycorrhizal fungal hosts.
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spelling pubmed-42225452014-11-07 Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1) Grubisha, Lisa C. Nelson, Bailey A. Dowie, Nicholas J. Miller, Steven L. Klooster, Matthew R. Appl Plant Sci Primer Note • Premise of the study: Pterospora andromedea (Ericaceae) is a mycoheterotrophic plant endemic to North America with a disjunct distribution. Eastern populations are in decline compared to western populations. Microsatellite loci will allow comparison of genetic diversity in endangered to nonthreatened populations. • Methods and Results: Illumina MiSeq sequencing resulted in development of 12 polymorphic microsatellite loci from 63 perfect microsatellite loci tested. One polymorphic locus was obtained from a traditional enrichment method. These 13 loci were screened across two western and two eastern populations. For western and eastern populations, respectively, number of alleles ranged from one to 10 and one to four, and observed heterozygosity ranged from 0.000 to 0.389 and 0.000 to 0.143. • Conclusions: These are the first microsatellite loci developed for Pterospora. They will be useful in conservation efforts of the eastern populations and for examination of population genetic parameters at different geographic scales and comparison with mycorrhizal fungal hosts. Botanical Society of America 2014-10-29 /pmc/articles/PMC4222545/ /pubmed/25383268 http://dx.doi.org/10.3732/apps.1400072 Text en © 2014 Grubisha et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Grubisha, Lisa C.
Nelson, Bailey A.
Dowie, Nicholas J.
Miller, Steven L.
Klooster, Matthew R.
Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title_full Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title_fullStr Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title_full_unstemmed Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title_short Characterization of microsatellite markers for pinedrops, Pterospora andromedea (Ericaceae), from Illumina MiSeq sequencing(1)
title_sort characterization of microsatellite markers for pinedrops, pterospora andromedea (ericaceae), from illumina miseq sequencing(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222545/
https://www.ncbi.nlm.nih.gov/pubmed/25383268
http://dx.doi.org/10.3732/apps.1400072
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