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Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
• Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkofe...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222547/ https://www.ncbi.nlm.nih.gov/pubmed/25383270 http://dx.doi.org/10.3732/apps.1400079 |
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author | Aguilar-Barajas, Esther Sork, Victoria L. González-Zamora, Arturo Rocha-Ramírez, Víctor Arroyo-Rodríguez, Víctor Oyama, Ken |
author_facet | Aguilar-Barajas, Esther Sork, Victoria L. González-Zamora, Arturo Rocha-Ramírez, Víctor Arroyo-Rodríguez, Víctor Oyama, Ken |
author_sort | Aguilar-Barajas, Esther |
collection | PubMed |
description | • Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkoferi through 454 GS-FLX Titanium pyrosequencing of genomic DNA. The number of alleles ranged from three to 12. The observed and expected heterozygosities ranged from 0.382 to 1.00 and from 0.353 to 0.733, respectively. The amplification was also successful in S. mombin and two genera of Anacardiaceae: Rhus aromatica and Toxicodendron radicans. • Conclusions: These microsatellite loci will be useful to assess the genetic diversity and population structure of S. radlkoferi and related species, and will allow us to investigate the effects of seed dispersal by spider monkeys (Ateles geoffroyi) on the genetic structure and diversity of S. radlkoferi populations in a fragmented rainforest. |
format | Online Article Text |
id | pubmed-4222547 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-42225472014-11-07 Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) Aguilar-Barajas, Esther Sork, Victoria L. González-Zamora, Arturo Rocha-Ramírez, Víctor Arroyo-Rodríguez, Víctor Oyama, Ken Appl Plant Sci Primer Note • Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkoferi through 454 GS-FLX Titanium pyrosequencing of genomic DNA. The number of alleles ranged from three to 12. The observed and expected heterozygosities ranged from 0.382 to 1.00 and from 0.353 to 0.733, respectively. The amplification was also successful in S. mombin and two genera of Anacardiaceae: Rhus aromatica and Toxicodendron radicans. • Conclusions: These microsatellite loci will be useful to assess the genetic diversity and population structure of S. radlkoferi and related species, and will allow us to investigate the effects of seed dispersal by spider monkeys (Ateles geoffroyi) on the genetic structure and diversity of S. radlkoferi populations in a fragmented rainforest. Botanical Society of America 2014-11-03 /pmc/articles/PMC4222547/ /pubmed/25383270 http://dx.doi.org/10.3732/apps.1400079 Text en © 2014 Aguilar-Barajas et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Aguilar-Barajas, Esther Sork, Victoria L. González-Zamora, Arturo Rocha-Ramírez, Víctor Arroyo-Rodríguez, Víctor Oyama, Ken Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title | Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title_full | Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title_fullStr | Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title_full_unstemmed | Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title_short | Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) |
title_sort | isolation and characterization of polymorphic microsatellite loci in spondias radlkoferi (anacardiaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222547/ https://www.ncbi.nlm.nih.gov/pubmed/25383270 http://dx.doi.org/10.3732/apps.1400079 |
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