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Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)

• Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkofe...

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Autores principales: Aguilar-Barajas, Esther, Sork, Victoria L., González-Zamora, Arturo, Rocha-Ramírez, Víctor, Arroyo-Rodríguez, Víctor, Oyama, Ken
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222547/
https://www.ncbi.nlm.nih.gov/pubmed/25383270
http://dx.doi.org/10.3732/apps.1400079
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author Aguilar-Barajas, Esther
Sork, Victoria L.
González-Zamora, Arturo
Rocha-Ramírez, Víctor
Arroyo-Rodríguez, Víctor
Oyama, Ken
author_facet Aguilar-Barajas, Esther
Sork, Victoria L.
González-Zamora, Arturo
Rocha-Ramírez, Víctor
Arroyo-Rodríguez, Víctor
Oyama, Ken
author_sort Aguilar-Barajas, Esther
collection PubMed
description • Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkoferi through 454 GS-FLX Titanium pyrosequencing of genomic DNA. The number of alleles ranged from three to 12. The observed and expected heterozygosities ranged from 0.382 to 1.00 and from 0.353 to 0.733, respectively. The amplification was also successful in S. mombin and two genera of Anacardiaceae: Rhus aromatica and Toxicodendron radicans. • Conclusions: These microsatellite loci will be useful to assess the genetic diversity and population structure of S. radlkoferi and related species, and will allow us to investigate the effects of seed dispersal by spider monkeys (Ateles geoffroyi) on the genetic structure and diversity of S. radlkoferi populations in a fragmented rainforest.
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spelling pubmed-42225472014-11-07 Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1) Aguilar-Barajas, Esther Sork, Victoria L. González-Zamora, Arturo Rocha-Ramírez, Víctor Arroyo-Rodríguez, Víctor Oyama, Ken Appl Plant Sci Primer Note • Premise of the study: Microsatellite markers were developed for Spondias radlkoferi to assess the impact of primate seed dispersal on the genetic diversity and structure of this important tree species of Anacardiaceae. • Methods and Results: Fourteen polymorphic loci were isolated from S. radlkoferi through 454 GS-FLX Titanium pyrosequencing of genomic DNA. The number of alleles ranged from three to 12. The observed and expected heterozygosities ranged from 0.382 to 1.00 and from 0.353 to 0.733, respectively. The amplification was also successful in S. mombin and two genera of Anacardiaceae: Rhus aromatica and Toxicodendron radicans. • Conclusions: These microsatellite loci will be useful to assess the genetic diversity and population structure of S. radlkoferi and related species, and will allow us to investigate the effects of seed dispersal by spider monkeys (Ateles geoffroyi) on the genetic structure and diversity of S. radlkoferi populations in a fragmented rainforest. Botanical Society of America 2014-11-03 /pmc/articles/PMC4222547/ /pubmed/25383270 http://dx.doi.org/10.3732/apps.1400079 Text en © 2014 Aguilar-Barajas et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Aguilar-Barajas, Esther
Sork, Victoria L.
González-Zamora, Arturo
Rocha-Ramírez, Víctor
Arroyo-Rodríguez, Víctor
Oyama, Ken
Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title_full Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title_fullStr Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title_full_unstemmed Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title_short Isolation and characterization of polymorphic microsatellite loci in Spondias radlkoferi (Anacardiaceae)(1)
title_sort isolation and characterization of polymorphic microsatellite loci in spondias radlkoferi (anacardiaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222547/
https://www.ncbi.nlm.nih.gov/pubmed/25383270
http://dx.doi.org/10.3732/apps.1400079
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