Cargando…

Lineage grammars: describing, simulating and analyzing population dynamics

BACKGROUND: Precise description of the dynamics of biological processes would enable the mathematical analysis and computational simulation of complex biological phenomena. Languages such as Chemical Reaction Networks and Process Algebras cater for the detailed description of interactions among indi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Spiro, Adam, Cardelli, Luca, Shapiro, Ehud
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223406/ https://www.ncbi.nlm.nih.gov/pubmed/25047682 http://dx.doi.org/10.1186/1471-2105-15-249

Ejemplares similares

eSTGt: a programming and simulation environment for population dynamics
por: Spiro, Adam, et al.
Publicado: (2016)

Erratum to: eSTGt: a programming and simulation environment for population dynamics
por: Spiro, Adam, et al.
Publicado: (2016)

Accuracy of Answers to Cell Lineage Questions Depends on Single-Cell Genomics Data Quality and Quantity
por: Spiro, Adam, et al.
Publicado: (2016)

A novel scale for describing corneal staining
por: Woods, Jill, et al.
Publicado: (2018)

Using uniformat and gene[rate] to Analyze Data with Ambiguities in Population Genetics
por: Nunes, José Manuel
Publicado: (2016)

RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
por: Liu, Qi, et al.
Publicado: (2008)

Multiobjective grammar-based genetic programming applied to the study of asthma and allergy epidemiology
por: Veiga, Rafael V., et al.
Publicado: (2018)

Describing Engagement in the HIV Care Cascade: A Methodological Study
por: Jhuti, Diya, et al.
Publicado: (2023)

Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
por: Sükösd, Zsuzsanna, et al.
Publicado: (2011)

Context-driven discovery of gene cassettes in mobile integrons using a computational grammar
por: Tsafnat, Guy, et al.
Publicado: (2009)

Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars
por: Dyrka, Witold, et al.
Publicado: (2021)

The ACTwatch project: methods to describe anti-malarial markets in seven countries
por: Shewchuk, Tanya, et al.
Publicado: (2011)

Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations
por: Chapal-Ilani, Noa, et al.
Publicado: (2013)

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
por: Russell, David J, et al.
Publicado: (2010)

Global mpox lineage discovery and rapid outbreak tracking with nanopore sequencing
por: Bosmeny, Michael S., et al.
Publicado: (2023)

Locally structured correlation (LSC) plots describe inhomogeneity in normally distributed correlated bivariate variables
por: Mumm, Rebekka, et al.
Publicado: (2022)

Grammars Across Time Analyzed (GATA): a dataset of 52 languages
por: Blum, Frederic, et al.
Publicado: (2023)

Reporting of complex interventions in clinical trials: development of a taxonomy to classify and describe fall-prevention interventions
por: Lamb, Sarah E, et al.
Publicado: (2011)

Parameter inference for stochastic single-cell dynamics from lineage tree data
por: Kuzmanovska, Irena, et al.
Publicado: (2017)

The Anti-grammar grammar book : Discovery activities for grammar teaching
por: Hall, Nick
Publicado: (1991)

An Optimal Protocol to Analyze the Rat Spinal Cord Proteome
por: Gil-Dones, F., et al.
Publicado: (2009)

Genotype List String: a grammar for describing HLA and KIR genotyping results in a text string
por: Milius, R P, et al.
Publicado: (2013)

Deconvolution of gene expression from cell populations across the C. elegans lineage
por: Burdick, Joshua T, et al.
Publicado: (2013)

A Simple Rank Product Approach for Analyzing Two Classes
por: Yang, Tae Young
Publicado: (2015)

Mining, analyzing, and integrating viral signals from metagenomic data
por: Zheng, Tingting, et al.
Publicado: (2019)

A Dynamic Bayesian Network model for the simulation of Amyotrophic Lateral Sclerosis progression
por: Zandonà, Alessandro, et al.
Publicado: (2019)

Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues
por: Frumkin, Dan, et al.
Publicado: (2008)

Methods for analyzing cost effectiveness data from cluster randomized trials
por: Bachmann, Max O, et al.
Publicado: (2007)

Microbe observation and cultivation array (MOCA) for cultivating and analyzing environmental microbiota
por: Gao, Weimin, et al.
Publicado: (2013)

Application of X-ray computed tomography to analyze the structure of sorghum grain
por: Crozier, Daniel, et al.
Publicado: (2022)

Grammar /
por: Thornbury, Scott, 1950-
Publicado: (2006)

Grammar /
por: Swan, Michael, 1936-
Publicado: (2005)

Grammar /
por: Palmer, F. R. (Frank Robert)
Publicado: (1984)

Grammar /
por: Batstone, Rob
Publicado: (1994)

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
por: Angly, Florent E, et al.
Publicado: (2014)

Network methods for describing sample relationships in genomic datasets: application to Huntington’s disease
por: Oldham, Michael C, et al.
Publicado: (2012)

Statistical methods for analyzing immunosignatures
por: Brown, Justin R, et al.
Publicado: (2011)

A novel biclustering approach with iterative optimization to analyze gene expression data
por: Sutheeworapong, Sawannee, et al.
Publicado: (2012)

Gendermetrics.NET: a novel software for analyzing the gender representation in scientific authoring
por: Bendels, Michael H. K., et al.
Publicado: (2016)

Application of the automated haematology analyzer XN-30 in an experimental rodent model of malaria
por: Tougan, Takahiro, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_1v8qn0a9qnqnjckk8fkt7aah3v