Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States

We report here the complete genome sequence of an emerging genotype of tobacco streak virus (TSV) infecting zucchini squash in Florida (TSV_FL13-07), obtained using deep sequencing of short RNAs (sRNAs) and validation by Sanger sequencing. TSV_FL13-07 shares only <90% sequence identity in all thr...

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Autores principales: Padmanabhan, Chellappan, Gao, Shan, Li, Rugang, Zhang, Shouan, Fei, Zhangjun, Ling, Kai-Shu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2014
Materias:
Viruses
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223465/
https://www.ncbi.nlm.nih.gov/pubmed/25377714
http://dx.doi.org/10.1128/genomeA.01138-14
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author Padmanabhan, Chellappan
Gao, Shan
Li, Rugang
Zhang, Shouan
Fei, Zhangjun
Ling, Kai-Shu
author_facet Padmanabhan, Chellappan
Gao, Shan
Li, Rugang
Zhang, Shouan
Fei, Zhangjun
Ling, Kai-Shu
author_sort Padmanabhan, Chellappan
collection PubMed
description We report here the complete genome sequence of an emerging genotype of tobacco streak virus (TSV) infecting zucchini squash in Florida (TSV_FL13-07), obtained using deep sequencing of short RNAs (sRNAs) and validation by Sanger sequencing. TSV_FL13-07 shares only <90% sequence identity in all three genomic RNAs to several known U.S. isolates.
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spelling pubmed-42234652014-11-10 Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States Padmanabhan, Chellappan Gao, Shan Li, Rugang Zhang, Shouan Fei, Zhangjun Ling, Kai-Shu Genome Announc Viruses We report here the complete genome sequence of an emerging genotype of tobacco streak virus (TSV) infecting zucchini squash in Florida (TSV_FL13-07), obtained using deep sequencing of short RNAs (sRNAs) and validation by Sanger sequencing. TSV_FL13-07 shares only <90% sequence identity in all three genomic RNAs to several known U.S. isolates. American Society for Microbiology 2014-11-06 /pmc/articles/PMC4223465/ /pubmed/25377714 http://dx.doi.org/10.1128/genomeA.01138-14 Text en Copyright © 2014 Padmanabhan et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Viruses
Padmanabhan, Chellappan
Gao, Shan
Li, Rugang
Zhang, Shouan
Fei, Zhangjun
Ling, Kai-Shu
Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title_full Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title_fullStr Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title_full_unstemmed Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title_short Complete Genome Sequence of an Emerging Genotype of Tobacco Streak Virus in the United States
title_sort complete genome sequence of an emerging genotype of tobacco streak virus in the united states
topic Viruses
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223465/
https://www.ncbi.nlm.nih.gov/pubmed/25377714
http://dx.doi.org/10.1128/genomeA.01138-14
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