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Building Water Models: A Different Approach
[Image: see text] Simplified classical water models are currently an indispensable component in practical atomistic simulations. Yet, despite several decades of intense research, these models are still far from perfect. Presented here is an alternative approach to constructing widely used point char...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226301/ https://www.ncbi.nlm.nih.gov/pubmed/25400877 http://dx.doi.org/10.1021/jz501780a |
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author | Izadi, Saeed Anandakrishnan, Ramu Onufriev, Alexey V. |
author_facet | Izadi, Saeed Anandakrishnan, Ramu Onufriev, Alexey V. |
author_sort | Izadi, Saeed |
collection | PubMed |
description | [Image: see text] Simplified classical water models are currently an indispensable component in practical atomistic simulations. Yet, despite several decades of intense research, these models are still far from perfect. Presented here is an alternative approach to constructing widely used point charge water models. In contrast to the conventional approach, we do not impose any geometry constraints on the model other than the symmetry. Instead, we optimize the distribution of point charges to best describe the “electrostatics” of the water molecule. The resulting “optimal” 3-charge, 4-point rigid water model (OPC) reproduces a comprehensive set of bulk properties significantly more accurately than commonly used rigid models: average error relative to experiment is 0.76%. Close agreement with experiment holds over a wide range of temperatures. The improvements in the proposed model extend beyond bulk properties: compared to common rigid models, predicted hydration free energies of small molecules using OPC are uniformly closer to experiment, with root-mean-square error <1 kcal/mol. |
format | Online Article Text |
id | pubmed-4226301 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-42263012015-10-16 Building Water Models: A Different Approach Izadi, Saeed Anandakrishnan, Ramu Onufriev, Alexey V. J Phys Chem Lett [Image: see text] Simplified classical water models are currently an indispensable component in practical atomistic simulations. Yet, despite several decades of intense research, these models are still far from perfect. Presented here is an alternative approach to constructing widely used point charge water models. In contrast to the conventional approach, we do not impose any geometry constraints on the model other than the symmetry. Instead, we optimize the distribution of point charges to best describe the “electrostatics” of the water molecule. The resulting “optimal” 3-charge, 4-point rigid water model (OPC) reproduces a comprehensive set of bulk properties significantly more accurately than commonly used rigid models: average error relative to experiment is 0.76%. Close agreement with experiment holds over a wide range of temperatures. The improvements in the proposed model extend beyond bulk properties: compared to common rigid models, predicted hydration free energies of small molecules using OPC are uniformly closer to experiment, with root-mean-square error <1 kcal/mol. American Chemical Society 2014-10-16 2014-11-06 /pmc/articles/PMC4226301/ /pubmed/25400877 http://dx.doi.org/10.1021/jz501780a Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Izadi, Saeed Anandakrishnan, Ramu Onufriev, Alexey V. Building Water Models: A Different Approach |
title | Building
Water Models: A Different Approach |
title_full | Building
Water Models: A Different Approach |
title_fullStr | Building
Water Models: A Different Approach |
title_full_unstemmed | Building
Water Models: A Different Approach |
title_short | Building
Water Models: A Different Approach |
title_sort | building
water models: a different approach |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226301/ https://www.ncbi.nlm.nih.gov/pubmed/25400877 http://dx.doi.org/10.1021/jz501780a |
work_keys_str_mv | AT izadisaeed buildingwatermodelsadifferentapproach AT anandakrishnanramu buildingwatermodelsadifferentapproach AT onufrievalexeyv buildingwatermodelsadifferentapproach |