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Spatial distributions at equilibrium under heterogeneous transient subdiffusion
Experimental measurements of the mobility of macromolecules, especially proteins, in cells and their membranes consistently report transient subdiffusion with possibly position-dependent—non-homogeneous—properties. However, the spatiotemporal dynamics of protein mobility when transient subdiffusion...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4228838/ https://www.ncbi.nlm.nih.gov/pubmed/25429273 http://dx.doi.org/10.3389/fphys.2014.00437 |
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author | Berry, Hugues Soula, Hédi A. |
author_facet | Berry, Hugues Soula, Hédi A. |
author_sort | Berry, Hugues |
collection | PubMed |
description | Experimental measurements of the mobility of macromolecules, especially proteins, in cells and their membranes consistently report transient subdiffusion with possibly position-dependent—non-homogeneous—properties. However, the spatiotemporal dynamics of protein mobility when transient subdiffusion is restricted to a subregion of space is still unclear. Here, we investigated the spatial distribution at equilibrium of proteins undergoing transient subdiffusion due to continuous-time random walks (CTRW) in a restricted subregion of a two-dimensional space. Our Monte-Carlo simulations suggest that this process leads to a non-homogeneous spatial distribution of the proteins at equilibrium, where proteins increasingly accumulate in the CTRW subregion as its anomalous properties are increasingly marked. In the case of transient CTRW, we show that this accumulation is dictated by the asymptotic Brownian regime and not by the initial anomalous transient dynamics. Moreover, our results also show that this dominance of the asymptotic Brownian regime cannot be simply generalized to other scenarios of transient subdiffusion. In particular, non-homogeneous transient subdiffusion due to hindrance by randomly-located immobile obstacles does not lead to such a strong local accumulation. These results suggest that, even though they exhibit the same time-dependence of the mean-squared displacement, the different scenarios proposed to account for subdiffusion in the cell lead to different protein distribution in space, even at equilibrium and without coupling with reaction. |
format | Online Article Text |
id | pubmed-4228838 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-42288382014-11-26 Spatial distributions at equilibrium under heterogeneous transient subdiffusion Berry, Hugues Soula, Hédi A. Front Physiol Physiology Experimental measurements of the mobility of macromolecules, especially proteins, in cells and their membranes consistently report transient subdiffusion with possibly position-dependent—non-homogeneous—properties. However, the spatiotemporal dynamics of protein mobility when transient subdiffusion is restricted to a subregion of space is still unclear. Here, we investigated the spatial distribution at equilibrium of proteins undergoing transient subdiffusion due to continuous-time random walks (CTRW) in a restricted subregion of a two-dimensional space. Our Monte-Carlo simulations suggest that this process leads to a non-homogeneous spatial distribution of the proteins at equilibrium, where proteins increasingly accumulate in the CTRW subregion as its anomalous properties are increasingly marked. In the case of transient CTRW, we show that this accumulation is dictated by the asymptotic Brownian regime and not by the initial anomalous transient dynamics. Moreover, our results also show that this dominance of the asymptotic Brownian regime cannot be simply generalized to other scenarios of transient subdiffusion. In particular, non-homogeneous transient subdiffusion due to hindrance by randomly-located immobile obstacles does not lead to such a strong local accumulation. These results suggest that, even though they exhibit the same time-dependence of the mean-squared displacement, the different scenarios proposed to account for subdiffusion in the cell lead to different protein distribution in space, even at equilibrium and without coupling with reaction. Frontiers Media S.A. 2014-11-12 /pmc/articles/PMC4228838/ /pubmed/25429273 http://dx.doi.org/10.3389/fphys.2014.00437 Text en Copyright © 2014 Berry and Soula. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Berry, Hugues Soula, Hédi A. Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title | Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title_full | Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title_fullStr | Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title_full_unstemmed | Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title_short | Spatial distributions at equilibrium under heterogeneous transient subdiffusion |
title_sort | spatial distributions at equilibrium under heterogeneous transient subdiffusion |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4228838/ https://www.ncbi.nlm.nih.gov/pubmed/25429273 http://dx.doi.org/10.3389/fphys.2014.00437 |
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