Cargando…

Quantification of variability in trichome patterns

While pattern formation is studied in various areas of biology, little is known about the noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which involves gen...

Descripción completa

Detalles Bibliográficos
Autores principales: Greese, Bettina, Hülskamp, Martin, Fleck, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4230044/
https://www.ncbi.nlm.nih.gov/pubmed/25431575
http://dx.doi.org/10.3389/fpls.2014.00596
_version_ 1782344217047072768
author Greese, Bettina
Hülskamp, Martin
Fleck, Christian
author_facet Greese, Bettina
Hülskamp, Martin
Fleck, Christian
author_sort Greese, Bettina
collection PubMed
description While pattern formation is studied in various areas of biology, little is known about the noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which involves genetic regulation and cell-to-cell communication. These processes are potentially variable due to, e.g., the abundance of cell components or environmental conditions. To elevate the understanding of regulatory processes underlying the pattern formation it is crucial to quantitatively analyze the variability in naturally occurring patterns. Here, we review recent approaches toward characterization of noise on trichome initiation. We present methods for the quantification of spatial patterns, which are the basis for data-driven mathematical modeling and enable the analysis of noise from different sources. Besides the insight gained on trichome formation, the examination of observed trichome patterns also shows that highly regulated biological processes can be substantially affected by variability.
format Online
Article
Text
id pubmed-4230044
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-42300442014-11-27 Quantification of variability in trichome patterns Greese, Bettina Hülskamp, Martin Fleck, Christian Front Plant Sci Plant Science While pattern formation is studied in various areas of biology, little is known about the noise leading to variations between individual realizations of the pattern. One prominent example for de novo pattern formation in plants is the patterning of trichomes on Arabidopsis leaves, which involves genetic regulation and cell-to-cell communication. These processes are potentially variable due to, e.g., the abundance of cell components or environmental conditions. To elevate the understanding of regulatory processes underlying the pattern formation it is crucial to quantitatively analyze the variability in naturally occurring patterns. Here, we review recent approaches toward characterization of noise on trichome initiation. We present methods for the quantification of spatial patterns, which are the basis for data-driven mathematical modeling and enable the analysis of noise from different sources. Besides the insight gained on trichome formation, the examination of observed trichome patterns also shows that highly regulated biological processes can be substantially affected by variability. Frontiers Media S.A. 2014-11-13 /pmc/articles/PMC4230044/ /pubmed/25431575 http://dx.doi.org/10.3389/fpls.2014.00596 Text en Copyright © 2014 Greese, Hülskamp and Fleck. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Greese, Bettina
Hülskamp, Martin
Fleck, Christian
Quantification of variability in trichome patterns
title Quantification of variability in trichome patterns
title_full Quantification of variability in trichome patterns
title_fullStr Quantification of variability in trichome patterns
title_full_unstemmed Quantification of variability in trichome patterns
title_short Quantification of variability in trichome patterns
title_sort quantification of variability in trichome patterns
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4230044/
https://www.ncbi.nlm.nih.gov/pubmed/25431575
http://dx.doi.org/10.3389/fpls.2014.00596
work_keys_str_mv AT greesebettina quantificationofvariabilityintrichomepatterns
AT hulskampmartin quantificationofvariabilityintrichomepatterns
AT fleckchristian quantificationofvariabilityintrichomepatterns