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A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data
Growth curves are monotonically increasing functions that measure repeatedly the same subjects over time. The classical growth curve model in the statistical literature is the Generalized Multivariate Analysis of Variance (GMANOVA) model. In order to model the tree trunk radius (r) over time (t) of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4234403/ https://www.ncbi.nlm.nih.gov/pubmed/25402427 http://dx.doi.org/10.1371/journal.pone.0112396 |
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author | Ricker, Martin Peña Ramírez, Víctor M. von Rosen, Dietrich |
author_facet | Ricker, Martin Peña Ramírez, Víctor M. von Rosen, Dietrich |
author_sort | Ricker, Martin |
collection | PubMed |
description | Growth curves are monotonically increasing functions that measure repeatedly the same subjects over time. The classical growth curve model in the statistical literature is the Generalized Multivariate Analysis of Variance (GMANOVA) model. In order to model the tree trunk radius (r) over time (t) of trees on different sites, GMANOVA is combined here with the adapted PL regression model Q = A·T+E, where for [Image: see text] [Image: see text] and for [Image: see text] [Image: see text], A = initial relative growth to be estimated, [Image: see text], and E is an error term for each tree and time point. Furthermore, Ei[–b·r] = [Image: see text], [Image: see text], with TPR being the turning point radius in a sigmoid curve, and [Image: see text] at [Image: see text] is an estimated calibrating time-radius point. Advantages of the approach are that growth rates can be compared among growth curves with different turning point radiuses and different starting points, hidden outliers are easily detectable, the method is statistically robust, and heteroscedasticity of the residuals among time points is allowed. The model was implemented with dendrochronological data of 235 Pinus montezumae trees on ten Mexican volcano sites to calculate comparison intervals for the estimated initial relative growth [Image: see text]. One site (at the Popocatépetl volcano) stood out, with [Image: see text] being 3.9 times the value of the site with the slowest-growing trees. Calculating variance components for the initial relative growth, 34% of the growth variation was found among sites, 31% among trees, and 35% over time. Without the Popocatépetl site, the numbers changed to 7%, 42%, and 51%. Further explanation of differences in growth would need to focus on factors that vary within sites and over time. |
format | Online Article Text |
id | pubmed-4234403 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-42344032014-11-21 A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data Ricker, Martin Peña Ramírez, Víctor M. von Rosen, Dietrich PLoS One Research Article Growth curves are monotonically increasing functions that measure repeatedly the same subjects over time. The classical growth curve model in the statistical literature is the Generalized Multivariate Analysis of Variance (GMANOVA) model. In order to model the tree trunk radius (r) over time (t) of trees on different sites, GMANOVA is combined here with the adapted PL regression model Q = A·T+E, where for [Image: see text] [Image: see text] and for [Image: see text] [Image: see text], A = initial relative growth to be estimated, [Image: see text], and E is an error term for each tree and time point. Furthermore, Ei[–b·r] = [Image: see text], [Image: see text], with TPR being the turning point radius in a sigmoid curve, and [Image: see text] at [Image: see text] is an estimated calibrating time-radius point. Advantages of the approach are that growth rates can be compared among growth curves with different turning point radiuses and different starting points, hidden outliers are easily detectable, the method is statistically robust, and heteroscedasticity of the residuals among time points is allowed. The model was implemented with dendrochronological data of 235 Pinus montezumae trees on ten Mexican volcano sites to calculate comparison intervals for the estimated initial relative growth [Image: see text]. One site (at the Popocatépetl volcano) stood out, with [Image: see text] being 3.9 times the value of the site with the slowest-growing trees. Calculating variance components for the initial relative growth, 34% of the growth variation was found among sites, 31% among trees, and 35% over time. Without the Popocatépetl site, the numbers changed to 7%, 42%, and 51%. Further explanation of differences in growth would need to focus on factors that vary within sites and over time. Public Library of Science 2014-11-17 /pmc/articles/PMC4234403/ /pubmed/25402427 http://dx.doi.org/10.1371/journal.pone.0112396 Text en © 2014 Ricker et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Ricker, Martin Peña Ramírez, Víctor M. von Rosen, Dietrich A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title | A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title_full | A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title_fullStr | A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title_full_unstemmed | A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title_short | A New Method to Compare Statistical Tree Growth Curves: The PL-GMANOVA Model and Its Application with Dendrochronological Data |
title_sort | new method to compare statistical tree growth curves: the pl-gmanova model and its application with dendrochronological data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4234403/ https://www.ncbi.nlm.nih.gov/pubmed/25402427 http://dx.doi.org/10.1371/journal.pone.0112396 |
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