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A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides
Background: Although cytological screening for cervical precancers has led to a reduction of cervical cancer incidence worldwide it is a subjective and variable method with low single-test sensitivity. New biomarkers like p16 that specifically highlight abnormal cervical cells can improve cytology p...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
IOS Press
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237613/ https://www.ncbi.nlm.nih.gov/pubmed/20208139 http://dx.doi.org/10.3233/CLO-2009-0508 |
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author | Grabe, Niels Lahrmann, Bernd Pommerencke, Thora von Knebel Doeberitz, Magnus Reuschenbach, Miriam Wentzensen, Nicolas |
author_facet | Grabe, Niels Lahrmann, Bernd Pommerencke, Thora von Knebel Doeberitz, Magnus Reuschenbach, Miriam Wentzensen, Nicolas |
author_sort | Grabe, Niels |
collection | PubMed |
description | Background: Although cytological screening for cervical precancers has led to a reduction of cervical cancer incidence worldwide it is a subjective and variable method with low single-test sensitivity. New biomarkers like p16 that specifically highlight abnormal cervical cells can improve cytology performance. Virtual microscopy offers an ideal platform for assisted evaluation and archiving of biomarker-stained slides. Methods: We first performed a quantitative analysis of p16-stained slides digitized with the Hamamatsu NDP slide scanner. From the results an automated algorithm was created to reliably detect cells, nuclei and p16-stained cells. The algorithm's performance was evaluated on two complete slides and tiles from 52 independent slides (11,628, 4094 and 25,619 cells/clusters, respectively). Results: We achieved excellent performance to discriminate unstained cells from nuclei and biomarker-stained cells. The automated algorithm showed a high overall and positive agreement (99.0–99.7% and 70.9–83.4%, respectively) with the gold standard and had a very high sensitivity (89.1–100.0%) and specificity (98.9–100.0%) to detect biomarker-stained cells. Conclusions: We implemented a virtual microscopy system allowing highly efficient automated prescreening and archiving of biomarker-stained slides. Based on the initial results, we will evaluate the performance of our system in large epidemiologic studies against disease endpoints. |
format | Online Article Text |
id | pubmed-4237613 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | IOS Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-42376132014-11-19 A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides Grabe, Niels Lahrmann, Bernd Pommerencke, Thora von Knebel Doeberitz, Magnus Reuschenbach, Miriam Wentzensen, Nicolas Cell Oncol Other Background: Although cytological screening for cervical precancers has led to a reduction of cervical cancer incidence worldwide it is a subjective and variable method with low single-test sensitivity. New biomarkers like p16 that specifically highlight abnormal cervical cells can improve cytology performance. Virtual microscopy offers an ideal platform for assisted evaluation and archiving of biomarker-stained slides. Methods: We first performed a quantitative analysis of p16-stained slides digitized with the Hamamatsu NDP slide scanner. From the results an automated algorithm was created to reliably detect cells, nuclei and p16-stained cells. The algorithm's performance was evaluated on two complete slides and tiles from 52 independent slides (11,628, 4094 and 25,619 cells/clusters, respectively). Results: We achieved excellent performance to discriminate unstained cells from nuclei and biomarker-stained cells. The automated algorithm showed a high overall and positive agreement (99.0–99.7% and 70.9–83.4%, respectively) with the gold standard and had a very high sensitivity (89.1–100.0%) and specificity (98.9–100.0%) to detect biomarker-stained cells. Conclusions: We implemented a virtual microscopy system allowing highly efficient automated prescreening and archiving of biomarker-stained slides. Based on the initial results, we will evaluate the performance of our system in large epidemiologic studies against disease endpoints. IOS Press 2010 2010-02-04 /pmc/articles/PMC4237613/ /pubmed/20208139 http://dx.doi.org/10.3233/CLO-2009-0508 Text en Copyright © 2010 Hindawi Publishing Corporation and the authors. |
spellingShingle | Other Grabe, Niels Lahrmann, Bernd Pommerencke, Thora von Knebel Doeberitz, Magnus Reuschenbach, Miriam Wentzensen, Nicolas A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title | A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title_full | A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title_fullStr | A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title_full_unstemmed | A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title_short | A Virtual Microscopy System to Scan, Evaluate and Archive Biomarker Enhanced Cervical Cytology Slides |
title_sort | virtual microscopy system to scan, evaluate and archive biomarker enhanced cervical cytology slides |
topic | Other |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4237613/ https://www.ncbi.nlm.nih.gov/pubmed/20208139 http://dx.doi.org/10.3233/CLO-2009-0508 |
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