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Discovering chemistry with an ab initio nanoreactor

Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, rece...

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Detalles Bibliográficos
Autores principales: Wang, Lee-Ping, Titov, Alexey, McGibbon, Robert, Liu, Fang, Pande, Vijay S., Martínez, Todd J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239668/
https://www.ncbi.nlm.nih.gov/pubmed/25411881
http://dx.doi.org/10.1038/nchem.2099
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author Wang, Lee-Ping
Titov, Alexey
McGibbon, Robert
Liu, Fang
Pande, Vijay S.
Martínez, Todd J.
author_facet Wang, Lee-Ping
Titov, Alexey
McGibbon, Robert
Liu, Fang
Pande, Vijay S.
Martínez, Todd J.
author_sort Wang, Lee-Ping
collection PubMed
description Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis from primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. These results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings.
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spelling pubmed-42396682015-06-01 Discovering chemistry with an ab initio nanoreactor Wang, Lee-Ping Titov, Alexey McGibbon, Robert Liu, Fang Pande, Vijay S. Martínez, Todd J. Nat Chem Article Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis from primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. These results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings. 2014-11-02 2014-12 /pmc/articles/PMC4239668/ /pubmed/25411881 http://dx.doi.org/10.1038/nchem.2099 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Wang, Lee-Ping
Titov, Alexey
McGibbon, Robert
Liu, Fang
Pande, Vijay S.
Martínez, Todd J.
Discovering chemistry with an ab initio nanoreactor
title Discovering chemistry with an ab initio nanoreactor
title_full Discovering chemistry with an ab initio nanoreactor
title_fullStr Discovering chemistry with an ab initio nanoreactor
title_full_unstemmed Discovering chemistry with an ab initio nanoreactor
title_short Discovering chemistry with an ab initio nanoreactor
title_sort discovering chemistry with an ab initio nanoreactor
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239668/
https://www.ncbi.nlm.nih.gov/pubmed/25411881
http://dx.doi.org/10.1038/nchem.2099
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