Cargando…
Discovering chemistry with an ab initio nanoreactor
Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, rece...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239668/ https://www.ncbi.nlm.nih.gov/pubmed/25411881 http://dx.doi.org/10.1038/nchem.2099 |
_version_ | 1782345619726139392 |
---|---|
author | Wang, Lee-Ping Titov, Alexey McGibbon, Robert Liu, Fang Pande, Vijay S. Martínez, Todd J. |
author_facet | Wang, Lee-Ping Titov, Alexey McGibbon, Robert Liu, Fang Pande, Vijay S. Martínez, Todd J. |
author_sort | Wang, Lee-Ping |
collection | PubMed |
description | Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis from primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. These results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings. |
format | Online Article Text |
id | pubmed-4239668 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
record_format | MEDLINE/PubMed |
spelling | pubmed-42396682015-06-01 Discovering chemistry with an ab initio nanoreactor Wang, Lee-Ping Titov, Alexey McGibbon, Robert Liu, Fang Pande, Vijay S. Martínez, Todd J. Nat Chem Article Chemical understanding is driven by the experimental discovery of new compounds and reactivity, and is supported by theory and computation that provides detailed physical insight. While theoretical and computational studies have generally focused on specific processes or mechanistic hypotheses, recent methodological and computational advances harken the advent of their principal role in discovery. Here we report the development and application of the ab initio nanoreactor – a highly accelerated, first-principles molecular dynamics simulation of chemical reactions that discovers new molecules and mechanisms without preordained reaction coordinates or elementary steps. Using the nanoreactor we show new pathways for glycine synthesis from primitive compounds proposed to exist on the early Earth, providing new insight into the classic Urey-Miller experiment. These results highlight the emergence of theoretical and computational chemistry as a tool for discovery in addition to its traditional role of interpreting experimental findings. 2014-11-02 2014-12 /pmc/articles/PMC4239668/ /pubmed/25411881 http://dx.doi.org/10.1038/nchem.2099 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Wang, Lee-Ping Titov, Alexey McGibbon, Robert Liu, Fang Pande, Vijay S. Martínez, Todd J. Discovering chemistry with an ab initio nanoreactor |
title | Discovering chemistry with an ab initio nanoreactor |
title_full | Discovering chemistry with an ab initio nanoreactor |
title_fullStr | Discovering chemistry with an ab initio nanoreactor |
title_full_unstemmed | Discovering chemistry with an ab initio nanoreactor |
title_short | Discovering chemistry with an ab initio nanoreactor |
title_sort | discovering chemistry with an ab initio nanoreactor |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4239668/ https://www.ncbi.nlm.nih.gov/pubmed/25411881 http://dx.doi.org/10.1038/nchem.2099 |
work_keys_str_mv | AT wangleeping discoveringchemistrywithanabinitionanoreactor AT titovalexey discoveringchemistrywithanabinitionanoreactor AT mcgibbonrobert discoveringchemistrywithanabinitionanoreactor AT liufang discoveringchemistrywithanabinitionanoreactor AT pandevijays discoveringchemistrywithanabinitionanoreactor AT martineztoddj discoveringchemistrywithanabinitionanoreactor |