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A new model of time scheme for progression of colorectal cancer

BACKGROUND: tumourigenesis can be regarded as an evolutionary process, in which the transformation of a normal cell into a tumour cell involves a number of limiting genetic and epigenetic events. To study the progression process, time schemes have been proposed for studying the process of colorectal...

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Autores principales: Sun, Shuhao, Klebaner, Fima, Tian, Tianhai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243096/
https://www.ncbi.nlm.nih.gov/pubmed/25350788
http://dx.doi.org/10.1186/1752-0509-8-S3-S2
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author Sun, Shuhao
Klebaner, Fima
Tian, Tianhai
author_facet Sun, Shuhao
Klebaner, Fima
Tian, Tianhai
author_sort Sun, Shuhao
collection PubMed
description BACKGROUND: tumourigenesis can be regarded as an evolutionary process, in which the transformation of a normal cell into a tumour cell involves a number of limiting genetic and epigenetic events. To study the progression process, time schemes have been proposed for studying the process of colorectal cancer based on extensive clinical investigations. Moreover, a number of mathematical models have been designed to describe this evolutionary process. These models assumed that the mutation rate of genes is constant during different stages. However, it has been pointed that the subsequent driver mutations appear faster than the previous ones and the cumulative time to have more driver mutations grows with the growing number of gene mutations. Thus it is still a challenge to calculate the time when the first mutation occurs and to determine the influence of tumour size on the mutation rate. RESULTS: In this work we present a general framework to remedy the shortcoming of existing models. Rather than considering the information of gene mutations based on a population of patients, we for the first time determine the values of the selective advantage of cancer cells and initial mutation rate for individual patients. The averaged values of doubling time and selective advantage coefficient determined by our model are consistent with the predictions made by the published models. Our calculation showed that the values of biological parameters, such as the selective advantage coefficient, initial mutation rate and cell doubling time diversely depend on individuals. Our model has successfully predicted the values of several important parameters in cancer progression, such as the selective advantage coefficient, initial mutation rate and cell doubling time. In addition, experimental data validated our predicted initial mutation rate and cell doubling time. CONCLUSIONS: The introduced new parameter makes our proposed model more flexible to fix various types of information based on different patients in cancer progression.
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spelling pubmed-42430962014-11-26 A new model of time scheme for progression of colorectal cancer Sun, Shuhao Klebaner, Fima Tian, Tianhai BMC Syst Biol Research BACKGROUND: tumourigenesis can be regarded as an evolutionary process, in which the transformation of a normal cell into a tumour cell involves a number of limiting genetic and epigenetic events. To study the progression process, time schemes have been proposed for studying the process of colorectal cancer based on extensive clinical investigations. Moreover, a number of mathematical models have been designed to describe this evolutionary process. These models assumed that the mutation rate of genes is constant during different stages. However, it has been pointed that the subsequent driver mutations appear faster than the previous ones and the cumulative time to have more driver mutations grows with the growing number of gene mutations. Thus it is still a challenge to calculate the time when the first mutation occurs and to determine the influence of tumour size on the mutation rate. RESULTS: In this work we present a general framework to remedy the shortcoming of existing models. Rather than considering the information of gene mutations based on a population of patients, we for the first time determine the values of the selective advantage of cancer cells and initial mutation rate for individual patients. The averaged values of doubling time and selective advantage coefficient determined by our model are consistent with the predictions made by the published models. Our calculation showed that the values of biological parameters, such as the selective advantage coefficient, initial mutation rate and cell doubling time diversely depend on individuals. Our model has successfully predicted the values of several important parameters in cancer progression, such as the selective advantage coefficient, initial mutation rate and cell doubling time. In addition, experimental data validated our predicted initial mutation rate and cell doubling time. CONCLUSIONS: The introduced new parameter makes our proposed model more flexible to fix various types of information based on different patients in cancer progression. BioMed Central 2014-10-22 /pmc/articles/PMC4243096/ /pubmed/25350788 http://dx.doi.org/10.1186/1752-0509-8-S3-S2 Text en Copyright © 2014 Sun et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Sun, Shuhao
Klebaner, Fima
Tian, Tianhai
A new model of time scheme for progression of colorectal cancer
title A new model of time scheme for progression of colorectal cancer
title_full A new model of time scheme for progression of colorectal cancer
title_fullStr A new model of time scheme for progression of colorectal cancer
title_full_unstemmed A new model of time scheme for progression of colorectal cancer
title_short A new model of time scheme for progression of colorectal cancer
title_sort new model of time scheme for progression of colorectal cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243096/
https://www.ncbi.nlm.nih.gov/pubmed/25350788
http://dx.doi.org/10.1186/1752-0509-8-S3-S2
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