Cargando…

Quality evaluation of extracted ion chromatograms and chromatographic peaks in liquid chromatography/mass spectrometry-based metabolomics data

BACKGROUND: Extracted ion chromatogram (EIC) extraction and chromatographic peak detection are two important processing procedures in liquid chromatography/mass spectrometry (LC/MS)-based metabolomics data analysis. Most commonly, the LC/MS technique employs electrospray ionization as the ionization...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Wenchao, Zhao, Patrick X
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4251050/ https://www.ncbi.nlm.nih.gov/pubmed/25350128 http://dx.doi.org/10.1186/1471-2105-15-S11-S5

Ejemplares similares

Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
por: Hoffmann, Nils, et al.
Publicado: (2012)

TRACES: A Lightweight Browser for Liquid Chromatography–Multiple Reaction Monitoring–Mass Spectrometry Chromatograms
por: Kita, Yoshihiro, et al.
Publicado: (2022)

An iterative block-shifting approach to retention time alignment that preserves the shape and area of gas chromatography-mass spectrometry peaks
por: Chae, Minho, et al.
Publicado: (2008)

XFlow: An algorithm for extracting ion chromatograms
por: Gutierrez, Mathew, et al.
Publicado: (2020)

Review of Peak Detection Algorithms in Liquid-Chromatography-Mass Spectrometry
por: Zhang, Jianqiu, et al.
Publicado: (2009)

Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics
por: Cao, Mingshu, et al.
Publicado: (2014)

Unwrapping Wrap-around in Gas (or Liquid) Chromatographic Cyclic Ion Mobility–Mass Spectrometry
por: Breen, Jake, et al.
Publicado: (2022)

Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry
por: Searle, Brian C., et al.
Publicado: (2018)

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets
por: Wandy, Joe, et al.
Publicado: (2015)

Nonlinear preprocessing method for detecting peaks from gas chromatograms
por: Shim, Byonghyo, et al.
Publicado: (2009)

Antiparasitic Potential of Chromatographic Fractions of Nephrolepis biserrata and Liquid Chromatography-Quadrupole Time-of-Flight-Mass Spectrometry Analysis
por: Shah, Muhammad Dawood, et al.
Publicado: (2021)

A Data Set of 255,000 Randomly Selected and Manually Classified Extracted Ion Chromatograms for Evaluation of Peak Detection Methods
por: Müller, Erik, et al.
Publicado: (2020)

Rapid screening of sulfonamides in dietary supplements based on extracted common ion chromatogram and neutral loss scan by LC-Q/TOF-mass spectrometry
por: Ki, Nam-Yong, et al.
Publicado: (2018)

Transfusion Associated Peak in Hb HPLC Chromatogram – a Case Report
por: Jain, Sonal, et al.
Publicado: (2012)

Finding Correspondence between Metabolomic Features in Untargeted Liquid Chromatography–Mass Spectrometry Metabolomics Datasets
por: Climaco Pinto, Rui, et al.
Publicado: (2022)

Applications of liquid chromatography-mass spectrometry based metabolomics in predictive and personalized medicine
por: Zhou, Juntuo, et al.
Publicado: (2022)

Serum Metabolomic Profiling in Aging Mice Using Liquid Chromatography—Mass Spectrometry
por: Yue, Tong, et al.
Publicado: (2022)

Picky with peakpicking: assessing chromatographic peak quality with simple metrics in metabolomics
por: Kumler, William, et al.
Publicado: (2023)

Countercurrent chromatographic fractionation followed by gas chromatography/mass spectrometry identification of alkylresorcinols in rye
por: Hammerschick, Tim, et al.
Publicado: (2020)

Liquid chromatography and differential mobility spectrometry—data-independent mass spectrometry for comprehensive multidimensional separations in metabolomics
por: Ekmekciu, Lysi, et al.
Publicado: (2023)

Prediction of peptide drift time in ion mobility mass spectrometry from sequence-based features
por: Wang, Bing, et al.
Publicado: (2013)

Combined hydrophilic interaction liquid chromatography-scanning field asymmetric waveform ion mobility spectrometry-time-of-flight mass spectrometry for untargeted metabolomics
por: Szykuła, Katarzyna M., et al.
Publicado: (2019)

Model-based peak alignment of metabolomic profiling from comprehensive two-dimensional gas chromatography mass spectrometry
por: Jeong, Jaesik, et al.
Publicado: (2012)

A metabolomic strategy based on integrating headspace gas chromatography-mass spectrometry and liquid chromatography-mass spectrometry to differentiate the five cultivars of Chrysanthemum flower
por: Zhang, Lin-Ning, et al.
Publicado: (2018)

Serum Metabolomics of Benign Essential Blepharospasm Using Liquid Chromatography and Orbitrap Mass Spectrometry
por: Zhao, Han, et al.
Publicado: (2022)

Ensuring Fact-Based Metabolite Identification in Liquid Chromatography–Mass Spectrometry-Based Metabolomics
por: Theodoridis, Georgios, et al.
Publicado: (2023)

Application of Screening Experimental Designs to Assess Chromatographic Isotope Effect upon Isotope-Coded Derivatization for Quantitative Liquid Chromatography–Mass Spectrometry
por: Szarka, Szabolcs, et al.
Publicado: (2014)

Back to the Basics of Liquid Chromatography-Mass Spectrometry
por: Kim, Young Jin, et al.
Publicado: (2022)

Metabolomic Profiling of Mice Serum during Toxoplasmosis Progression Using Liquid Chromatography-Mass Spectrometry
por: Zhou, Chun-Xue, et al.
Publicado: (2016)

Plasma Metabolomics of Acute Coronary Syndrome Patients Based on Untargeted Liquid Chromatography–Mass Spectrometry
por: Zhong, Wei, et al.
Publicado: (2021)

The Pseudotargeted Metabolomics Study on the Toxicity of Fuzi Using Ultraperformance Liquid Chromatography Tandem Mass Spectrometry
por: Wu, Huifei, et al.
Publicado: (2022)

Revealing the pharmacological effect and mechanism of darutoside on gouty arthritis by liquid chromatography/mass spectrometry and metabolomics
por: Wang, Jing, et al.
Publicado: (2022)

Untargeted saliva metabolomics by liquid chromatography—Mass spectrometry reveals markers of COVID-19 severity
por: Frampas, Cecile F., et al.
Publicado: (2022)

Metabolomics Analysis of Different Tissues of Lonicera japonica Thunb. Based on Liquid Chromatography with Mass Spectrometry
por: Wang, Yan, et al.
Publicado: (2023)

Determination of Eight Coccidiostats in Eggs by Liquid–Liquid Extraction–Solid-Phase Extraction and Liquid Chromatography–Tandem Mass Spectrometry
por: Wang, Bo, et al.
Publicado: (2020)

Quality analysis of Polygala tenuifolia root by ultrahigh performance liquid chromatography–tandem mass spectrometry and gas chromatography–mass spectrometry
por: Wu, Dan, et al.
Publicado: (2014)

Comprehensive Metabolome Analysis of Fermented Aqueous Extracts of Viscum album L. by Liquid Chromatography−High Resolution Tandem Mass Spectrometry
por: Peñaloza, Evelyn, et al.
Publicado: (2020)

Evaluation of Two Simultaneous Metabolomic and Proteomic Extraction Protocols Assessed by Ultra-High-Performance Liquid Chromatography Tandem Mass Spectrometry
por: Zenati, Ruba A., et al.
Publicado: (2023)

A Two-stage Peak Alignment Algorithm for Two-Dimensional Gas Chromatography Time-of-Flight Mass Spectrometry-Based Metabolomics
por: Wang, Bing
Publicado: (2013)

Comparative Investigation of Raw and Processed Radix Polygoni Multiflori on the Treatment of Vascular Dementia by Liquid Chromatograph−Mass Spectrometry Based Metabolomic Approach
por: Wu, Fengye, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_18pu5pu7khelbs3tjauiph26gq