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Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images

Indirect immunofluorescence based on HEp-2 cell substrate is the most commonly used staining method for antinuclear autoantibodies associated with different types of autoimmune pathologies. The aim of this paper is to design an automatic system to identify the staining patterns based on block segmen...

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Autores principales: Li, Jiaqian, Tseng, Kuo-Kun, Hsieh, Zu Yi, Yang, Ching Wen, Huang, Huang-Nan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256175/
https://www.ncbi.nlm.nih.gov/pubmed/25474260
http://dx.doi.org/10.1371/journal.pone.0113132
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author Li, Jiaqian
Tseng, Kuo-Kun
Hsieh, Zu Yi
Yang, Ching Wen
Huang, Huang-Nan
author_facet Li, Jiaqian
Tseng, Kuo-Kun
Hsieh, Zu Yi
Yang, Ching Wen
Huang, Huang-Nan
author_sort Li, Jiaqian
collection PubMed
description Indirect immunofluorescence based on HEp-2 cell substrate is the most commonly used staining method for antinuclear autoantibodies associated with different types of autoimmune pathologies. The aim of this paper is to design an automatic system to identify the staining patterns based on block segmentation compared to the cell segmentation most used in previous research. Various feature descriptors and classifiers are tested and compared in the classification of the staining pattern of blocks and it is found that the technique of the combination of the local binary pattern and the k-nearest neighbor algorithm achieve the best performance. Relying on the results of block pattern classification, experiments on the whole images show that classifier fusion rules are able to identify the staining patterns of the whole well (specimen image) with a total accuracy of about 94.62%.
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spelling pubmed-42561752014-12-11 Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images Li, Jiaqian Tseng, Kuo-Kun Hsieh, Zu Yi Yang, Ching Wen Huang, Huang-Nan PLoS One Research Article Indirect immunofluorescence based on HEp-2 cell substrate is the most commonly used staining method for antinuclear autoantibodies associated with different types of autoimmune pathologies. The aim of this paper is to design an automatic system to identify the staining patterns based on block segmentation compared to the cell segmentation most used in previous research. Various feature descriptors and classifiers are tested and compared in the classification of the staining pattern of blocks and it is found that the technique of the combination of the local binary pattern and the k-nearest neighbor algorithm achieve the best performance. Relying on the results of block pattern classification, experiments on the whole images show that classifier fusion rules are able to identify the staining patterns of the whole well (specimen image) with a total accuracy of about 94.62%. Public Library of Science 2014-12-04 /pmc/articles/PMC4256175/ /pubmed/25474260 http://dx.doi.org/10.1371/journal.pone.0113132 Text en © 2014 Li et al This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Li, Jiaqian
Tseng, Kuo-Kun
Hsieh, Zu Yi
Yang, Ching Wen
Huang, Huang-Nan
Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title_full Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title_fullStr Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title_full_unstemmed Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title_short Staining Pattern Classification of Antinuclear Autoantibodies Based on Block Segmentation in Indirect Immunofluorescence Images
title_sort staining pattern classification of antinuclear autoantibodies based on block segmentation in indirect immunofluorescence images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256175/
https://www.ncbi.nlm.nih.gov/pubmed/25474260
http://dx.doi.org/10.1371/journal.pone.0113132
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