Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis

The average nucleotide identity (ANI) determines if two genomes belong to the same species. Using ANI, we detected mislabeled genomes and recommend verifying with ANI and multilocus phylogenetic analysis the species affiliations of the announced genomes. The slightly different results obtained with...

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Detalles Bibliográficos
Autores principales: Figueras, María José, Beaz-Hidalgo, Roxana, Hossain, Mohammad J., Liles, Mark R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2014
Materias:
Commentary
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256179/
https://www.ncbi.nlm.nih.gov/pubmed/25477398
http://dx.doi.org/10.1128/genomeA.00927-14
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author Figueras, María José
Beaz-Hidalgo, Roxana
Hossain, Mohammad J.
Liles, Mark R.
author_facet Figueras, María José
Beaz-Hidalgo, Roxana
Hossain, Mohammad J.
Liles, Mark R.
author_sort Figueras, María José
collection PubMed
description The average nucleotide identity (ANI) determines if two genomes belong to the same species. Using ANI, we detected mislabeled genomes and recommend verifying with ANI and multilocus phylogenetic analysis the species affiliations of the announced genomes. The slightly different results obtained with different ANI calculation software can potentially mislead taxonomic inferences.
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spelling pubmed-42561792014-12-05 Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis Figueras, María José Beaz-Hidalgo, Roxana Hossain, Mohammad J. Liles, Mark R. Genome Announc Commentary The average nucleotide identity (ANI) determines if two genomes belong to the same species. Using ANI, we detected mislabeled genomes and recommend verifying with ANI and multilocus phylogenetic analysis the species affiliations of the announced genomes. The slightly different results obtained with different ANI calculation software can potentially mislead taxonomic inferences. American Society for Microbiology 2014-12-04 /pmc/articles/PMC4256179/ /pubmed/25477398 http://dx.doi.org/10.1128/genomeA.00927-14 Text en Copyright © 2014 Figueras et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Commentary
Figueras, María José
Beaz-Hidalgo, Roxana
Hossain, Mohammad J.
Liles, Mark R.
Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title_full Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title_fullStr Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title_full_unstemmed Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title_short Taxonomic Affiliation of New Genomes Should Be Verified Using Average Nucleotide Identity and Multilocus Phylogenetic Analysis
title_sort taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256179/
https://www.ncbi.nlm.nih.gov/pubmed/25477398
http://dx.doi.org/10.1128/genomeA.00927-14
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