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Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
N-Protected derivatives of 1-aminocyclohexaneacetic acid (β(3,3)-Ac(6)c), namely Valeroyl-β(3,3)-Ac(6)c-OH [2-(1-pentanamidocyclohexyl)acetic acid, C(13)H(23)NO(3)], (I), Fmoc-β(3,3)-Ac(6)c-OH [2-(1-{[(9H-fluoren-9-yloxy)carbonyl]amino}cyclohexyl)acetic acid, C(23)H(25)NO(4)], (II), and Pyr-β(3,3...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257263/ https://www.ncbi.nlm.nih.gov/pubmed/25484721 http://dx.doi.org/10.1107/S1600536814020777 |
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author | Ahmad Wani, Naiem Gupta, Vivek K. Kant, Rajni Aravinda, Subrayashastry Rai, Rajkishor |
author_facet | Ahmad Wani, Naiem Gupta, Vivek K. Kant, Rajni Aravinda, Subrayashastry Rai, Rajkishor |
author_sort | Ahmad Wani, Naiem |
collection | PubMed |
description | N-Protected derivatives of 1-aminocyclohexaneacetic acid (β(3,3)-Ac(6)c), namely Valeroyl-β(3,3)-Ac(6)c-OH [2-(1-pentanamidocyclohexyl)acetic acid, C(13)H(23)NO(3)], (I), Fmoc-β(3,3)-Ac(6)c-OH [2-(1-{[(9H-fluoren-9-yloxy)carbonyl]amino}cyclohexyl)acetic acid, C(23)H(25)NO(4)], (II), and Pyr-β(3,3)-Ac(6)c-OH {2-[1-(pyrazine-2-amido)cyclohexyl]acetic acid, C(13)H(17)N(3)O(3)}, (III), were synthesized and their conformational properties were determined by X-ray diffraction analysis. The backbone torsion angles (ϕ, θ) for β(3,3)-Ac(6)c-OH are restricted to gauche conformations in all the derivatives, with a chair conformation of the cyclohexane ring. In the crystal structure of (I), the packing of molecules shows both carboxylic acid R (2) (2)(8) O—H⋯O and centrosymmetric R (2) (2)(14) N—H⋯O hydrogen-bonding interactions, giving rise to chains along the c-axis direction. In (II), centrosymmetric carboxylic acid R (2) (2)(8) O—H⋯O dimers are extended through N—H⋯O hydrogen bonds and together with inter-ring π–π interactions between Fmoc groups [ring centroid distance = 3.786 (2) Å], generate a layered structure lying parallel to (010). In the case of compound (III), carboxylic acid O—H⋯N(pyrazine) hydrogen bonds give rise to zigzag ribbon structures extending along the c-axis direction. |
format | Online Article Text |
id | pubmed-4257263 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-42572632014-12-05 Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives Ahmad Wani, Naiem Gupta, Vivek K. Kant, Rajni Aravinda, Subrayashastry Rai, Rajkishor Acta Crystallogr Sect E Struct Rep Online Research Communications N-Protected derivatives of 1-aminocyclohexaneacetic acid (β(3,3)-Ac(6)c), namely Valeroyl-β(3,3)-Ac(6)c-OH [2-(1-pentanamidocyclohexyl)acetic acid, C(13)H(23)NO(3)], (I), Fmoc-β(3,3)-Ac(6)c-OH [2-(1-{[(9H-fluoren-9-yloxy)carbonyl]amino}cyclohexyl)acetic acid, C(23)H(25)NO(4)], (II), and Pyr-β(3,3)-Ac(6)c-OH {2-[1-(pyrazine-2-amido)cyclohexyl]acetic acid, C(13)H(17)N(3)O(3)}, (III), were synthesized and their conformational properties were determined by X-ray diffraction analysis. The backbone torsion angles (ϕ, θ) for β(3,3)-Ac(6)c-OH are restricted to gauche conformations in all the derivatives, with a chair conformation of the cyclohexane ring. In the crystal structure of (I), the packing of molecules shows both carboxylic acid R (2) (2)(8) O—H⋯O and centrosymmetric R (2) (2)(14) N—H⋯O hydrogen-bonding interactions, giving rise to chains along the c-axis direction. In (II), centrosymmetric carboxylic acid R (2) (2)(8) O—H⋯O dimers are extended through N—H⋯O hydrogen bonds and together with inter-ring π–π interactions between Fmoc groups [ring centroid distance = 3.786 (2) Å], generate a layered structure lying parallel to (010). In the case of compound (III), carboxylic acid O—H⋯N(pyrazine) hydrogen bonds give rise to zigzag ribbon structures extending along the c-axis direction. International Union of Crystallography 2014-10-04 /pmc/articles/PMC4257263/ /pubmed/25484721 http://dx.doi.org/10.1107/S1600536814020777 Text en © Ahmad Wani et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Communications Ahmad Wani, Naiem Gupta, Vivek K. Kant, Rajni Aravinda, Subrayashastry Rai, Rajkishor Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives |
title | Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
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title_full | Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
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title_fullStr | Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
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title_full_unstemmed | Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
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title_short | Conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)Ac(6)c) in N-protected derivatives
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title_sort | conformation and crystal structures of 1-aminocyclohexaneacetic acid (β(3,3)ac(6)c) in n-protected derivatives |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257263/ https://www.ncbi.nlm.nih.gov/pubmed/25484721 http://dx.doi.org/10.1107/S1600536814020777 |
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