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Development of a Nasonia vitripennis outbred laboratory population for genetic analysis

The parasitoid wasp genus Nasonia has rapidly become a genetic model system for developmental and evolutionary biology. The release of its genome sequence led to the development of high-resolution genomic tools, for both interspecific and intraspecific research, which has resulted in great advances...

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Autores principales: van de Zande, Louis, Ferber, Steven, de Haan, Ammerins, Beukeboom, Leo W, van Heerwaarden, Joost, Pannebakker, Bart A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260118/
https://www.ncbi.nlm.nih.gov/pubmed/24215457
http://dx.doi.org/10.1111/1755-0998.12201
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author van de Zande, Louis
Ferber, Steven
de Haan, Ammerins
Beukeboom, Leo W
van Heerwaarden, Joost
Pannebakker, Bart A
author_facet van de Zande, Louis
Ferber, Steven
de Haan, Ammerins
Beukeboom, Leo W
van Heerwaarden, Joost
Pannebakker, Bart A
author_sort van de Zande, Louis
collection PubMed
description The parasitoid wasp genus Nasonia has rapidly become a genetic model system for developmental and evolutionary biology. The release of its genome sequence led to the development of high-resolution genomic tools, for both interspecific and intraspecific research, which has resulted in great advances in understanding Nasonia biology. To further advance the utility of Nasonia vitripennis as a genetic model system and to be able to fully exploit the advantages of its fully sequenced and annotated genome, we developed a genetically variable and well-characterized experimental population. In this study, we describe the establishment of the genetically diverse HVRx laboratory population from strains collected from the field in the Netherlands. We established a maintenance method that retains genetic variation over generations of culturing in the laboratory. As a characterization of its genetic composition, we provide data on the standing genetic variation and estimate the effective population size (N(e)) by microsatellite analysis. A genome-wide description of polymorphism is provided through pooled resequencing, which yielded 417 331 high-quality SNPs spanning all five Nasonia chromosomes. The HVRx population and its characterization are freely available as a community resource for investigators seeking to elucidate the genetic basis of complex trait variation using the Nasonia model system.
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spelling pubmed-42601182014-12-11 Development of a Nasonia vitripennis outbred laboratory population for genetic analysis van de Zande, Louis Ferber, Steven de Haan, Ammerins Beukeboom, Leo W van Heerwaarden, Joost Pannebakker, Bart A Mol Ecol Resour Resource Articles The parasitoid wasp genus Nasonia has rapidly become a genetic model system for developmental and evolutionary biology. The release of its genome sequence led to the development of high-resolution genomic tools, for both interspecific and intraspecific research, which has resulted in great advances in understanding Nasonia biology. To further advance the utility of Nasonia vitripennis as a genetic model system and to be able to fully exploit the advantages of its fully sequenced and annotated genome, we developed a genetically variable and well-characterized experimental population. In this study, we describe the establishment of the genetically diverse HVRx laboratory population from strains collected from the field in the Netherlands. We established a maintenance method that retains genetic variation over generations of culturing in the laboratory. As a characterization of its genetic composition, we provide data on the standing genetic variation and estimate the effective population size (N(e)) by microsatellite analysis. A genome-wide description of polymorphism is provided through pooled resequencing, which yielded 417 331 high-quality SNPs spanning all five Nasonia chromosomes. The HVRx population and its characterization are freely available as a community resource for investigators seeking to elucidate the genetic basis of complex trait variation using the Nasonia model system. BlackWell Publishing Ltd 2014-05 2013-12-12 /pmc/articles/PMC4260118/ /pubmed/24215457 http://dx.doi.org/10.1111/1755-0998.12201 Text en © 2013 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Resource Articles
van de Zande, Louis
Ferber, Steven
de Haan, Ammerins
Beukeboom, Leo W
van Heerwaarden, Joost
Pannebakker, Bart A
Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title_full Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title_fullStr Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title_full_unstemmed Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title_short Development of a Nasonia vitripennis outbred laboratory population for genetic analysis
title_sort development of a nasonia vitripennis outbred laboratory population for genetic analysis
topic Resource Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4260118/
https://www.ncbi.nlm.nih.gov/pubmed/24215457
http://dx.doi.org/10.1111/1755-0998.12201
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