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A load driver device for engineering modularity in biological networks
The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a g...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4262674/ https://www.ncbi.nlm.nih.gov/pubmed/25419739 http://dx.doi.org/10.1038/nbt.3044 |
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author | Mishra, Deepak Rivera-Ortiz, Phillip M. Lin, Allen Vecchio, Domitilla Del Weiss, Ron |
author_facet | Mishra, Deepak Rivera-Ortiz, Phillip M. Lin, Allen Vecchio, Domitilla Del Weiss, Ron |
author_sort | Mishra, Deepak |
collection | PubMed |
description | The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a genetic device named a load driver that mitigates the impact of load on circuit function, and we demonstrate its behavior in Saccharomyces cerevisiae. The load driver implements the design principle of time scale separation: inclusion of the load driver’s fast phosphotransfer processes restores the capability of a slower transcriptional circuit to respond to time-varying input signals even in the presence of substantial load. Without the load driver, we observe circuit behavior that suffers from 76% delay in response time and a 25% decrease in system bandwidth due to load. With the addition of a load driver, circuit performance is almost completely restored. Load drivers will serve as fundamental building blocks in the creation of complex, higher level genetic circuits. |
format | Online Article Text |
id | pubmed-4262674 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
record_format | MEDLINE/PubMed |
spelling | pubmed-42626742015-06-01 A load driver device for engineering modularity in biological networks Mishra, Deepak Rivera-Ortiz, Phillip M. Lin, Allen Vecchio, Domitilla Del Weiss, Ron Nat Biotechnol Article The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a genetic device named a load driver that mitigates the impact of load on circuit function, and we demonstrate its behavior in Saccharomyces cerevisiae. The load driver implements the design principle of time scale separation: inclusion of the load driver’s fast phosphotransfer processes restores the capability of a slower transcriptional circuit to respond to time-varying input signals even in the presence of substantial load. Without the load driver, we observe circuit behavior that suffers from 76% delay in response time and a 25% decrease in system bandwidth due to load. With the addition of a load driver, circuit performance is almost completely restored. Load drivers will serve as fundamental building blocks in the creation of complex, higher level genetic circuits. 2014-11-24 2014-12 /pmc/articles/PMC4262674/ /pubmed/25419739 http://dx.doi.org/10.1038/nbt.3044 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Mishra, Deepak Rivera-Ortiz, Phillip M. Lin, Allen Vecchio, Domitilla Del Weiss, Ron A load driver device for engineering modularity in biological networks |
title | A load driver device for engineering modularity in biological networks |
title_full | A load driver device for engineering modularity in biological networks |
title_fullStr | A load driver device for engineering modularity in biological networks |
title_full_unstemmed | A load driver device for engineering modularity in biological networks |
title_short | A load driver device for engineering modularity in biological networks |
title_sort | load driver device for engineering modularity in biological networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4262674/ https://www.ncbi.nlm.nih.gov/pubmed/25419739 http://dx.doi.org/10.1038/nbt.3044 |
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