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A load driver device for engineering modularity in biological networks

The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a g...

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Detalles Bibliográficos
Autores principales: Mishra, Deepak, Rivera-Ortiz, Phillip M., Lin, Allen, Vecchio, Domitilla Del, Weiss, Ron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4262674/
https://www.ncbi.nlm.nih.gov/pubmed/25419739
http://dx.doi.org/10.1038/nbt.3044
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author Mishra, Deepak
Rivera-Ortiz, Phillip M.
Lin, Allen
Vecchio, Domitilla Del
Weiss, Ron
author_facet Mishra, Deepak
Rivera-Ortiz, Phillip M.
Lin, Allen
Vecchio, Domitilla Del
Weiss, Ron
author_sort Mishra, Deepak
collection PubMed
description The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a genetic device named a load driver that mitigates the impact of load on circuit function, and we demonstrate its behavior in Saccharomyces cerevisiae. The load driver implements the design principle of time scale separation: inclusion of the load driver’s fast phosphotransfer processes restores the capability of a slower transcriptional circuit to respond to time-varying input signals even in the presence of substantial load. Without the load driver, we observe circuit behavior that suffers from 76% delay in response time and a 25% decrease in system bandwidth due to load. With the addition of a load driver, circuit performance is almost completely restored. Load drivers will serve as fundamental building blocks in the creation of complex, higher level genetic circuits.
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spelling pubmed-42626742015-06-01 A load driver device for engineering modularity in biological networks Mishra, Deepak Rivera-Ortiz, Phillip M. Lin, Allen Vecchio, Domitilla Del Weiss, Ron Nat Biotechnol Article The behavior of gene modules in complex synthetic circuits is often unpredictable(1–4). Upon joining modules to create a circuit, downstream elements (such as binding sites for a regulatory protein) apply a load to upstream modules that can negatively affect circuit function(1,5). Here we devise a genetic device named a load driver that mitigates the impact of load on circuit function, and we demonstrate its behavior in Saccharomyces cerevisiae. The load driver implements the design principle of time scale separation: inclusion of the load driver’s fast phosphotransfer processes restores the capability of a slower transcriptional circuit to respond to time-varying input signals even in the presence of substantial load. Without the load driver, we observe circuit behavior that suffers from 76% delay in response time and a 25% decrease in system bandwidth due to load. With the addition of a load driver, circuit performance is almost completely restored. Load drivers will serve as fundamental building blocks in the creation of complex, higher level genetic circuits. 2014-11-24 2014-12 /pmc/articles/PMC4262674/ /pubmed/25419739 http://dx.doi.org/10.1038/nbt.3044 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Mishra, Deepak
Rivera-Ortiz, Phillip M.
Lin, Allen
Vecchio, Domitilla Del
Weiss, Ron
A load driver device for engineering modularity in biological networks
title A load driver device for engineering modularity in biological networks
title_full A load driver device for engineering modularity in biological networks
title_fullStr A load driver device for engineering modularity in biological networks
title_full_unstemmed A load driver device for engineering modularity in biological networks
title_short A load driver device for engineering modularity in biological networks
title_sort load driver device for engineering modularity in biological networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4262674/
https://www.ncbi.nlm.nih.gov/pubmed/25419739
http://dx.doi.org/10.1038/nbt.3044
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