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Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol

[Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can...

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Autores principales: Kale, Seyit, Sode, Olaseni, Weare, Jonathan, Dinner, Aaron R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263463/
https://www.ncbi.nlm.nih.gov/pubmed/25516726
http://dx.doi.org/10.1021/ct500852y
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author Kale, Seyit
Sode, Olaseni
Weare, Jonathan
Dinner, Aaron R.
author_facet Kale, Seyit
Sode, Olaseni
Weare, Jonathan
Dinner, Aaron R.
author_sort Kale, Seyit
collection PubMed
description [Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can be used to accelerate quantum-chemical string calculations. We demonstrate the method by finding minimum-energy paths for two well-characterized reactions: tautomerization of malonaldehyde and Claissen rearrangement of chorismate to prephanate. For these reactions, we show that preconditioning density functional theory (DFT) with a semiempirical method reduces the computational cost for reaching a converged path that is an optimum under DFT by several fold. The approach also shows promise for free energy calculations when thermal noise can be controlled.
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spelling pubmed-42634632015-11-07 Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol Kale, Seyit Sode, Olaseni Weare, Jonathan Dinner, Aaron R. J Chem Theory Comput [Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can be used to accelerate quantum-chemical string calculations. We demonstrate the method by finding minimum-energy paths for two well-characterized reactions: tautomerization of malonaldehyde and Claissen rearrangement of chorismate to prephanate. For these reactions, we show that preconditioning density functional theory (DFT) with a semiempirical method reduces the computational cost for reaching a converged path that is an optimum under DFT by several fold. The approach also shows promise for free energy calculations when thermal noise can be controlled. American Chemical Society 2014-11-07 2014-12-09 /pmc/articles/PMC4263463/ /pubmed/25516726 http://dx.doi.org/10.1021/ct500852y Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Kale, Seyit
Sode, Olaseni
Weare, Jonathan
Dinner, Aaron R.
Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title_full Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title_fullStr Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title_full_unstemmed Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title_short Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
title_sort finding chemical reaction paths with a multilevel preconditioning protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263463/
https://www.ncbi.nlm.nih.gov/pubmed/25516726
http://dx.doi.org/10.1021/ct500852y
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