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Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol
[Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263463/ https://www.ncbi.nlm.nih.gov/pubmed/25516726 http://dx.doi.org/10.1021/ct500852y |
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author | Kale, Seyit Sode, Olaseni Weare, Jonathan Dinner, Aaron R. |
author_facet | Kale, Seyit Sode, Olaseni Weare, Jonathan Dinner, Aaron R. |
author_sort | Kale, Seyit |
collection | PubMed |
description | [Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can be used to accelerate quantum-chemical string calculations. We demonstrate the method by finding minimum-energy paths for two well-characterized reactions: tautomerization of malonaldehyde and Claissen rearrangement of chorismate to prephanate. For these reactions, we show that preconditioning density functional theory (DFT) with a semiempirical method reduces the computational cost for reaching a converged path that is an optimum under DFT by several fold. The approach also shows promise for free energy calculations when thermal noise can be controlled. |
format | Online Article Text |
id | pubmed-4263463 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-42634632015-11-07 Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol Kale, Seyit Sode, Olaseni Weare, Jonathan Dinner, Aaron R. J Chem Theory Comput [Image: see text] Finding transition paths for chemical reactions can be computationally costly owing to the level of quantum-chemical theory needed for accuracy. Here, we show that a multilevel preconditioning scheme that was recently introduced (Tempkin et al. J. Chem. Phys.2014, 140, 184114) can be used to accelerate quantum-chemical string calculations. We demonstrate the method by finding minimum-energy paths for two well-characterized reactions: tautomerization of malonaldehyde and Claissen rearrangement of chorismate to prephanate. For these reactions, we show that preconditioning density functional theory (DFT) with a semiempirical method reduces the computational cost for reaching a converged path that is an optimum under DFT by several fold. The approach also shows promise for free energy calculations when thermal noise can be controlled. American Chemical Society 2014-11-07 2014-12-09 /pmc/articles/PMC4263463/ /pubmed/25516726 http://dx.doi.org/10.1021/ct500852y Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Kale, Seyit Sode, Olaseni Weare, Jonathan Dinner, Aaron R. Finding Chemical Reaction Paths with a Multilevel Preconditioning Protocol |
title | Finding
Chemical Reaction Paths with a Multilevel
Preconditioning Protocol |
title_full | Finding
Chemical Reaction Paths with a Multilevel
Preconditioning Protocol |
title_fullStr | Finding
Chemical Reaction Paths with a Multilevel
Preconditioning Protocol |
title_full_unstemmed | Finding
Chemical Reaction Paths with a Multilevel
Preconditioning Protocol |
title_short | Finding
Chemical Reaction Paths with a Multilevel
Preconditioning Protocol |
title_sort | finding
chemical reaction paths with a multilevel
preconditioning protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263463/ https://www.ncbi.nlm.nih.gov/pubmed/25516726 http://dx.doi.org/10.1021/ct500852y |
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