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Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network

Graph analysis is a promising tool to quantify brain connectivity. However, an essential requirement is that the graph measures are reproducible and robust. We have studied the reproducibility and robustness of various graph measures in group based and in individual binary and weighted networks deri...

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Autores principales: Wang, Yu, Nelissen, Natalie, Adamczuk, Katarzyna, De Weer, An-Sofie, Vandenbulcke, Mathieu, Sunaert, Stefan, Vandenberghe, Rik, Dupont, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264875/
https://www.ncbi.nlm.nih.gov/pubmed/25500823
http://dx.doi.org/10.1371/journal.pone.0115215
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author Wang, Yu
Nelissen, Natalie
Adamczuk, Katarzyna
De Weer, An-Sofie
Vandenbulcke, Mathieu
Sunaert, Stefan
Vandenberghe, Rik
Dupont, Patrick
author_facet Wang, Yu
Nelissen, Natalie
Adamczuk, Katarzyna
De Weer, An-Sofie
Vandenbulcke, Mathieu
Sunaert, Stefan
Vandenberghe, Rik
Dupont, Patrick
author_sort Wang, Yu
collection PubMed
description Graph analysis is a promising tool to quantify brain connectivity. However, an essential requirement is that the graph measures are reproducible and robust. We have studied the reproducibility and robustness of various graph measures in group based and in individual binary and weighted networks derived from a task fMRI experiment during explicit associative-semantic processing of words and pictures. The nodes of the network were defined using an independent study and the connectivity was based on the partial correlation of the time series between any pair of nodes. The results showed that in case of binary networks, global graph measures exhibit a good reproducibility and robustness for networks which are not too sparse and these figures of merit depend on the graph measure and on the density of the network. Furthermore, group based binary networks should be derived from groups of sufficient size and the lower the density the more subjects are required to obtain robust values. Local graph measures are very variable in terms of reproducibility and should be interpreted with care. For weighted networks, we found good reproducibility (average test-retest variability <5% and ICC values >0.4) when using subject specific networks and this will allow us to relate network properties to individual subject information.
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spelling pubmed-42648752014-12-19 Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network Wang, Yu Nelissen, Natalie Adamczuk, Katarzyna De Weer, An-Sofie Vandenbulcke, Mathieu Sunaert, Stefan Vandenberghe, Rik Dupont, Patrick PLoS One Research Article Graph analysis is a promising tool to quantify brain connectivity. However, an essential requirement is that the graph measures are reproducible and robust. We have studied the reproducibility and robustness of various graph measures in group based and in individual binary and weighted networks derived from a task fMRI experiment during explicit associative-semantic processing of words and pictures. The nodes of the network were defined using an independent study and the connectivity was based on the partial correlation of the time series between any pair of nodes. The results showed that in case of binary networks, global graph measures exhibit a good reproducibility and robustness for networks which are not too sparse and these figures of merit depend on the graph measure and on the density of the network. Furthermore, group based binary networks should be derived from groups of sufficient size and the lower the density the more subjects are required to obtain robust values. Local graph measures are very variable in terms of reproducibility and should be interpreted with care. For weighted networks, we found good reproducibility (average test-retest variability <5% and ICC values >0.4) when using subject specific networks and this will allow us to relate network properties to individual subject information. Public Library of Science 2014-12-12 /pmc/articles/PMC4264875/ /pubmed/25500823 http://dx.doi.org/10.1371/journal.pone.0115215 Text en © 2014 Wang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Wang, Yu
Nelissen, Natalie
Adamczuk, Katarzyna
De Weer, An-Sofie
Vandenbulcke, Mathieu
Sunaert, Stefan
Vandenberghe, Rik
Dupont, Patrick
Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title_full Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title_fullStr Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title_full_unstemmed Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title_short Reproducibility and Robustness of Graph Measures of the Associative-Semantic Network
title_sort reproducibility and robustness of graph measures of the associative-semantic network
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264875/
https://www.ncbi.nlm.nih.gov/pubmed/25500823
http://dx.doi.org/10.1371/journal.pone.0115215
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