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DNA barcode-based delineation of putative species: efficient start for taxonomic workflows

The analysis of DNA barcode sequences with varying techniques for cluster recognition provides an efficient approach for recognizing putative species (operational taxonomic units, OTUs). This approach accelerates and improves taxonomic workflows by exposing cryptic species and decreasing the risk of...

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Detalles Bibliográficos
Autores principales: Kekkonen, Mari, Hebert, Paul D N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BlackWell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264940/
https://www.ncbi.nlm.nih.gov/pubmed/24479435
http://dx.doi.org/10.1111/1755-0998.12233
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author Kekkonen, Mari
Hebert, Paul D N
author_facet Kekkonen, Mari
Hebert, Paul D N
author_sort Kekkonen, Mari
collection PubMed
description The analysis of DNA barcode sequences with varying techniques for cluster recognition provides an efficient approach for recognizing putative species (operational taxonomic units, OTUs). This approach accelerates and improves taxonomic workflows by exposing cryptic species and decreasing the risk of synonymy. This study tested the congruence of OTUs resulting from the application of three analytical methods (ABGD, BIN, GMYC) to sequence data for Australian hypertrophine moths. OTUs supported by all three approaches were viewed as robust, but 20% of the OTUs were only recognized by one or two of the methods. These OTUs were examined for three criteria to clarify their status. Monophyly and diagnostic nucleotides were both uninformative, but information on ranges was useful as sympatric sister OTUs were viewed as distinct, while allopatric OTUs were merged. This approach revealed 124 OTUs of Hypertrophinae, a more than twofold increase from the currently recognized 51 species. Because this analytical protocol is both fast and repeatable, it provides a valuable tool for establishing a basic understanding of species boundaries that can be validated with subsequent studies.
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spelling pubmed-42649402014-12-19 DNA barcode-based delineation of putative species: efficient start for taxonomic workflows Kekkonen, Mari Hebert, Paul D N Mol Ecol Resour Resource Articles The analysis of DNA barcode sequences with varying techniques for cluster recognition provides an efficient approach for recognizing putative species (operational taxonomic units, OTUs). This approach accelerates and improves taxonomic workflows by exposing cryptic species and decreasing the risk of synonymy. This study tested the congruence of OTUs resulting from the application of three analytical methods (ABGD, BIN, GMYC) to sequence data for Australian hypertrophine moths. OTUs supported by all three approaches were viewed as robust, but 20% of the OTUs were only recognized by one or two of the methods. These OTUs were examined for three criteria to clarify their status. Monophyly and diagnostic nucleotides were both uninformative, but information on ranges was useful as sympatric sister OTUs were viewed as distinct, while allopatric OTUs were merged. This approach revealed 124 OTUs of Hypertrophinae, a more than twofold increase from the currently recognized 51 species. Because this analytical protocol is both fast and repeatable, it provides a valuable tool for establishing a basic understanding of species boundaries that can be validated with subsequent studies. BlackWell Publishing Ltd 2014-07 2014-03-10 /pmc/articles/PMC4264940/ /pubmed/24479435 http://dx.doi.org/10.1111/1755-0998.12233 Text en © 2014 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Resource Articles
Kekkonen, Mari
Hebert, Paul D N
DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title_full DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title_fullStr DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title_full_unstemmed DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title_short DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
title_sort dna barcode-based delineation of putative species: efficient start for taxonomic workflows
topic Resource Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264940/
https://www.ncbi.nlm.nih.gov/pubmed/24479435
http://dx.doi.org/10.1111/1755-0998.12233
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