Cargando…

ptRNApred: computational identification and classification of post-transcriptional RNA

Non-coding RNAs (ncRNAs) are known to play important functional roles in the cell. However, their identification and recognition in genomic sequences remains challenging. In silico methods, such as classification tools, offer a fast and reliable way for such screening and multiple classifiers have a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gupta, Yask, Witte, Mareike, Möller, Steffen, Ludwig, Ralf J., Restle, Tobias, Zillikens, Detlef, Ibrahim, Saleh M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4267668/ https://www.ncbi.nlm.nih.gov/pubmed/25303994 http://dx.doi.org/10.1093/nar/gku918

Ejemplares similares

Dissecting genetics of cutaneous miRNA in a mouse model of an autoimmune blistering disease
por: Gupta, Yask, et al.
Publicado: (2016)

FRET-based assay to screen inhibitors of HIV-1 reverse transcriptase and nucleocapsid protein
por: Sharma, Kamal K., et al.
Publicado: (2016)

Multi-stringency wash of partially hybridized 60-mer probes reveals that the stringency along the probe decreases with distance from the microarray surface
por: Poulsen, Lena, et al.
Publicado: (2008)

A Family with Atypical Hailey Hailey Disease- Is There More to the Underlying Genetics than ATP2C1?
por: van Beek, Nina, et al.
Publicado: (2015)

Gene Expression Analysis Reveals Novel Shared Gene Signatures and Candidate Molecular Mechanisms between Pemphigus and Systemic Lupus Erythematosus in CD4(+) T Cells
por: Sezin, Tanya, et al.
Publicado: (2018)

LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature
por: Pian, Cong, et al.
Publicado: (2016)

Disentangling transcription factor binding site complexity
por: Eggeling, Ralf
Publicado: (2018)

StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy
por: Wang, Xin, et al.
Publicado: (2022)

Taxonomic classification of metagenomic shotgun sequences with CARMA3
por: Gerlach, Wolfgang, et al.
Publicado: (2011)

Towards enhanced and interpretable clustering/classification in integrative genomics
por: Lu, Yang Young, et al.
Publicado: (2017)

Identification and classification of reverse transcriptases in bacterial genomes and metagenomes
por: Sharifi, Fatemeh, et al.
Publicado: (2021)

TransposonUltimate: software for transposon classification, annotation and detection
por: Riehl, Kevin, et al.
Publicado: (2022)

Identification and classification of ncRNA molecules using graph properties
por: Childs, Liam, et al.
Publicado: (2009)

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering
por: Kelley, David R., et al.
Publicado: (2012)

Co-clustering phenome–genome for phenotype classification and disease gene discovery
por: Hwang, TaeHyun, et al.
Publicado: (2012)

Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
por: Friedel, Caroline C., et al.
Publicado: (2009)

Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju
por: Tovo, Anna, et al.
Publicado: (2020)

Heterogeneous ensemble approach with discriminative features and modified-SMOTEbagging for pre-miRNA classification
por: Lertampaiporn, Supatcha, et al.
Publicado: (2013)

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
por: Boyd, Joel A, et al.
Publicado: (2018)

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes
por: Rho, Mina, et al.
Publicado: (2009)

Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms
por: Liu, Jiemeng, et al.
Publicado: (2013)

Differential distribution improves gene selection stability and has competitive classification performance for patient survival
por: Strbenac, Dario, et al.
Publicado: (2016)

scMAGIC: accurately annotating single cells using two rounds of reference-based classification
por: Zhang, Yu, et al.
Publicado: (2022)

ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes
por: Waleń, Tomasz, et al.
Publicado: (2014)

Bound2Learn: a machine learning approach for classification of DNA-bound proteins from single-molecule tracking experiments
por: Kapadia, Nitin, et al.
Publicado: (2021)

Ethylenediamine derivatives efficiently react with oxidized RNA 3′ ends providing access to mono and dually labelled RNA probes for enzymatic assays and in vivo translation
por: Mamot, Adam, et al.
Publicado: (2021)

A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity
por: Christensen, Ryan G., et al.
Publicado: (2011)

Accurate ab initio prediction of NMR chemical shifts of nucleic acids and nucleic acids/protein complexes
por: Victora, Andrea, et al.
Publicado: (2014)

QSEA—modelling of genome-wide DNA methylation from sequencing enrichment experiments
por: Lienhard, Matthias, et al.
Publicado: (2017)

i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets
por: Proost, Sebastian, et al.
Publicado: (2012)

A high-resolution magnetic tweezer for single-molecule measurements
por: Kim, Kipom, et al.
Publicado: (2009)

Generating the optimal mRNA for therapy: HPLC purification eliminates immune activation and improves translation of nucleoside-modified, protein-encoding mRNA
por: Karikó, Katalin, et al.
Publicado: (2011)

Locked nucleic acid oligomers as handles for single molecule manipulation
por: Berezney, John P., et al.
Publicado: (2014)

Count ratio model reveals bias affecting NGS fold changes
por: Erhard, Florian, et al.
Publicado: (2015)

NetCore: a network propagation approach using node coreness
por: Barel, Gal, et al.
Publicado: (2020)

CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing
por: Li, Yongping, et al.
Publicado: (2020)

Diagnosis of Autoimmune Blistering Diseases
por: Witte, Mareike, et al.
Publicado: (2018)

Cell-specific CRISPR–Cas9 activation by microRNA-dependent expression of anti-CRISPR proteins
por: Hoffmann, Mareike D, et al.
Publicado: (2019)

Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein
por: Hoffmann, Mareike D, et al.
Publicado: (2020)

An optimized split-ubiquitin cDNA-library screening system to identify novel interactors of the human Frizzled 1 receptor
por: Dirnberger, Dietmar, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_6cjtv9j69n4ambdjpvduh5b67c