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Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective
Charge sensitivity analysis (CSA) in force-field atoms resolution was applied to describe the mutual polarization of reactants as well as charge-transfer (CT) effects. An inclusion complex of β-cyclodextrin with salicylic acid was used as a model system. Three CSA models were taken into account and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271185/ https://www.ncbi.nlm.nih.gov/pubmed/23392762 http://dx.doi.org/10.1007/s00894-013-1757-4 |
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author | Stachowicz, Anna Rogalski, Marek Korchowiec, Jacek |
author_facet | Stachowicz, Anna Rogalski, Marek Korchowiec, Jacek |
author_sort | Stachowicz, Anna |
collection | PubMed |
description | Charge sensitivity analysis (CSA) in force-field atoms resolution was applied to describe the mutual polarization of reactants as well as charge-transfer (CT) effects. An inclusion complex of β-cyclodextrin with salicylic acid was used as a model system. Three CSA models were taken into account and verified on a Born–Oppenheimer molecular dynamics (BOMD) trajectory. The models differed in terms of the equilibrium conditions imposed on the system. It was demonstrated that mutual polarization is an important source of stabilization, in contrast to the results obtained from static charge calculations. The energy lowering induced by CT was small and comparable to the CT stabilization that occurs in hydrogen-bonded systems. All models correctly described the main topological features of the BOMD energy surface. CSA in force-field atoms resolution qualitatively reproduced the charge reorganization accompanying hydrogen-bond formation. It was shown that CSA parameters are very sensitive to the bond formation process, which suggests that they could be applied in reactive force fields as detectors of newly formed chemical bonds. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00894-013-1757-4) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4271185 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-42711852014-12-22 Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective Stachowicz, Anna Rogalski, Marek Korchowiec, Jacek J Mol Model Original Paper Charge sensitivity analysis (CSA) in force-field atoms resolution was applied to describe the mutual polarization of reactants as well as charge-transfer (CT) effects. An inclusion complex of β-cyclodextrin with salicylic acid was used as a model system. Three CSA models were taken into account and verified on a Born–Oppenheimer molecular dynamics (BOMD) trajectory. The models differed in terms of the equilibrium conditions imposed on the system. It was demonstrated that mutual polarization is an important source of stabilization, in contrast to the results obtained from static charge calculations. The energy lowering induced by CT was small and comparable to the CT stabilization that occurs in hydrogen-bonded systems. All models correctly described the main topological features of the BOMD energy surface. CSA in force-field atoms resolution qualitatively reproduced the charge reorganization accompanying hydrogen-bond formation. It was shown that CSA parameters are very sensitive to the bond formation process, which suggests that they could be applied in reactive force fields as detectors of newly formed chemical bonds. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00894-013-1757-4) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2013-02-08 2013 /pmc/articles/PMC4271185/ /pubmed/23392762 http://dx.doi.org/10.1007/s00894-013-1757-4 Text en © The Author(s) 2013 https://creativecommons.org/licenses/by-nc/2.0/ Open Access This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. |
spellingShingle | Original Paper Stachowicz, Anna Rogalski, Marek Korchowiec, Jacek Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title | Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title_full | Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title_fullStr | Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title_full_unstemmed | Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title_short | Charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
title_sort | charge sensitivity approach to mutual polarization of reactants: molecular mechanics perspective |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271185/ https://www.ncbi.nlm.nih.gov/pubmed/23392762 http://dx.doi.org/10.1007/s00894-013-1757-4 |
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