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Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271252/ https://www.ncbi.nlm.nih.gov/pubmed/25524558 http://dx.doi.org/10.1038/srep07574 |
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author | Shulman, Jason Malatino, Franck Mo, Alexander Ryan, Killian Gunaratne, Gemunu H. |
author_facet | Shulman, Jason Malatino, Franck Mo, Alexander Ryan, Killian Gunaratne, Gemunu H. |
author_sort | Shulman, Jason |
collection | PubMed |
description | Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On the other hand, system responses to perturbations are often easily measured. We show how the collection of such responses –a response surface– can be used for network control. Analyses of model systems show that response surfaces are smooth and hence can be approximated using low order polynomials. Importantly, these approximations are largely insensitive to stochastic fluctuations in data or measurement errors. They can be used to compute how a small set of nodes need to be altered in order to direct the network close to a pre-specified target state. These ideas, illustrated on a nonlinear electrical circuit, can prove useful in many contexts including in reprogramming cellular states. |
format | Online Article Text |
id | pubmed-4271252 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-42712522014-12-30 Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces Shulman, Jason Malatino, Franck Mo, Alexander Ryan, Killian Gunaratne, Gemunu H. Sci Rep Article Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On the other hand, system responses to perturbations are often easily measured. We show how the collection of such responses –a response surface– can be used for network control. Analyses of model systems show that response surfaces are smooth and hence can be approximated using low order polynomials. Importantly, these approximations are largely insensitive to stochastic fluctuations in data or measurement errors. They can be used to compute how a small set of nodes need to be altered in order to direct the network close to a pre-specified target state. These ideas, illustrated on a nonlinear electrical circuit, can prove useful in many contexts including in reprogramming cellular states. Nature Publishing Group 2014-12-19 /pmc/articles/PMC4271252/ /pubmed/25524558 http://dx.doi.org/10.1038/srep07574 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/ |
spellingShingle | Article Shulman, Jason Malatino, Franck Mo, Alexander Ryan, Killian Gunaratne, Gemunu H. Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title | Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title_full | Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title_fullStr | Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title_full_unstemmed | Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title_short | Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces |
title_sort | controlling networks of nonlinearly-coupled nodes using response surfaces |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271252/ https://www.ncbi.nlm.nih.gov/pubmed/25524558 http://dx.doi.org/10.1038/srep07574 |
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