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Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On t...

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Autores principales: Shulman, Jason, Malatino, Franck, Mo, Alexander, Ryan, Killian, Gunaratne, Gemunu H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271252/
https://www.ncbi.nlm.nih.gov/pubmed/25524558
http://dx.doi.org/10.1038/srep07574
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author Shulman, Jason
Malatino, Franck
Mo, Alexander
Ryan, Killian
Gunaratne, Gemunu H.
author_facet Shulman, Jason
Malatino, Franck
Mo, Alexander
Ryan, Killian
Gunaratne, Gemunu H.
author_sort Shulman, Jason
collection PubMed
description Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On the other hand, system responses to perturbations are often easily measured. We show how the collection of such responses –a response surface– can be used for network control. Analyses of model systems show that response surfaces are smooth and hence can be approximated using low order polynomials. Importantly, these approximations are largely insensitive to stochastic fluctuations in data or measurement errors. They can be used to compute how a small set of nodes need to be altered in order to direct the network close to a pre-specified target state. These ideas, illustrated on a nonlinear electrical circuit, can prove useful in many contexts including in reprogramming cellular states.
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spelling pubmed-42712522014-12-30 Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces Shulman, Jason Malatino, Franck Mo, Alexander Ryan, Killian Gunaratne, Gemunu H. Sci Rep Article Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor the network topology is known for many important systems. On the other hand, system responses to perturbations are often easily measured. We show how the collection of such responses –a response surface– can be used for network control. Analyses of model systems show that response surfaces are smooth and hence can be approximated using low order polynomials. Importantly, these approximations are largely insensitive to stochastic fluctuations in data or measurement errors. They can be used to compute how a small set of nodes need to be altered in order to direct the network close to a pre-specified target state. These ideas, illustrated on a nonlinear electrical circuit, can prove useful in many contexts including in reprogramming cellular states. Nature Publishing Group 2014-12-19 /pmc/articles/PMC4271252/ /pubmed/25524558 http://dx.doi.org/10.1038/srep07574 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/4.0/
spellingShingle Article
Shulman, Jason
Malatino, Franck
Mo, Alexander
Ryan, Killian
Gunaratne, Gemunu H.
Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title_full Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title_fullStr Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title_full_unstemmed Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title_short Controlling Networks of Nonlinearly-Coupled Nodes using Response Surfaces
title_sort controlling networks of nonlinearly-coupled nodes using response surfaces
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4271252/
https://www.ncbi.nlm.nih.gov/pubmed/25524558
http://dx.doi.org/10.1038/srep07574
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