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Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study

Urinary tract infection (UTI) is a common disease with significant morbidity and economic burden, accounting for a significant part of the workload in clinical microbiology laboratories. Current clinical chemisty point-of-care diagnostics rely on imperfect dipstick analysis which only provides indir...

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Autores principales: Roine, Antti, Saviauk, Taavi, Kumpulainen, Pekka, Karjalainen, Markus, Tuokko, Antti, Aittoniemi, Janne, Vuento, Risto, Lekkala, Jukka, Lehtimäki, Terho, Tammela, Teuvo L., Oksala, Niku K. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272258/
https://www.ncbi.nlm.nih.gov/pubmed/25526592
http://dx.doi.org/10.1371/journal.pone.0114279
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author Roine, Antti
Saviauk, Taavi
Kumpulainen, Pekka
Karjalainen, Markus
Tuokko, Antti
Aittoniemi, Janne
Vuento, Risto
Lekkala, Jukka
Lehtimäki, Terho
Tammela, Teuvo L.
Oksala, Niku K. J.
author_facet Roine, Antti
Saviauk, Taavi
Kumpulainen, Pekka
Karjalainen, Markus
Tuokko, Antti
Aittoniemi, Janne
Vuento, Risto
Lekkala, Jukka
Lehtimäki, Terho
Tammela, Teuvo L.
Oksala, Niku K. J.
author_sort Roine, Antti
collection PubMed
description Urinary tract infection (UTI) is a common disease with significant morbidity and economic burden, accounting for a significant part of the workload in clinical microbiology laboratories. Current clinical chemisty point-of-care diagnostics rely on imperfect dipstick analysis which only provides indirect and insensitive evidence of urinary bacterial pathogens. An electronic nose (eNose) is a handheld device mimicking mammalian olfaction that potentially offers affordable and rapid analysis of samples without preparation at athmospheric pressure. In this study we demonstrate the applicability of ion mobility spectrometry (IMS) –based eNose to discriminate the most common UTI pathogens from gaseous headspace of culture plates rapidly and without sample preparation. We gathered a total of 101 culture samples containing four most common UTI bacteries: E. coli, S. saprophyticus, E. faecalis, Klebsiella spp and sterile culture plates. The samples were analyzed using ChemPro 100i device, consisting of IMS cell and six semiconductor sensors. Data analysis was conducted by linear discriminant analysis (LDA) and logistic regression (LR). The results were validated by leave-one-out and 5-fold cross validation analysis. In discrimination of sterile and bacterial samples sensitivity of 95% and specificity of 97% were achieved. The bacterial species were identified with sensitivity of 95% and specificity of 96% using eNose as compared to urine bacterial cultures. In conclusion: These findings strongly demonstrate the ability of our eNose to discriminate bacterial cultures and provides a proof of principle to use this method in urinanalysis of UTI.
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spelling pubmed-42722582014-12-26 Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study Roine, Antti Saviauk, Taavi Kumpulainen, Pekka Karjalainen, Markus Tuokko, Antti Aittoniemi, Janne Vuento, Risto Lekkala, Jukka Lehtimäki, Terho Tammela, Teuvo L. Oksala, Niku K. J. PLoS One Research Article Urinary tract infection (UTI) is a common disease with significant morbidity and economic burden, accounting for a significant part of the workload in clinical microbiology laboratories. Current clinical chemisty point-of-care diagnostics rely on imperfect dipstick analysis which only provides indirect and insensitive evidence of urinary bacterial pathogens. An electronic nose (eNose) is a handheld device mimicking mammalian olfaction that potentially offers affordable and rapid analysis of samples without preparation at athmospheric pressure. In this study we demonstrate the applicability of ion mobility spectrometry (IMS) –based eNose to discriminate the most common UTI pathogens from gaseous headspace of culture plates rapidly and without sample preparation. We gathered a total of 101 culture samples containing four most common UTI bacteries: E. coli, S. saprophyticus, E. faecalis, Klebsiella spp and sterile culture plates. The samples were analyzed using ChemPro 100i device, consisting of IMS cell and six semiconductor sensors. Data analysis was conducted by linear discriminant analysis (LDA) and logistic regression (LR). The results were validated by leave-one-out and 5-fold cross validation analysis. In discrimination of sterile and bacterial samples sensitivity of 95% and specificity of 97% were achieved. The bacterial species were identified with sensitivity of 95% and specificity of 96% using eNose as compared to urine bacterial cultures. In conclusion: These findings strongly demonstrate the ability of our eNose to discriminate bacterial cultures and provides a proof of principle to use this method in urinanalysis of UTI. Public Library of Science 2014-12-19 /pmc/articles/PMC4272258/ /pubmed/25526592 http://dx.doi.org/10.1371/journal.pone.0114279 Text en © 2014 Roine et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Roine, Antti
Saviauk, Taavi
Kumpulainen, Pekka
Karjalainen, Markus
Tuokko, Antti
Aittoniemi, Janne
Vuento, Risto
Lekkala, Jukka
Lehtimäki, Terho
Tammela, Teuvo L.
Oksala, Niku K. J.
Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title_full Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title_fullStr Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title_full_unstemmed Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title_short Rapid and Accurate Detection of Urinary Pathogens by Mobile IMS-Based Electronic Nose: A Proof-of-Principle Study
title_sort rapid and accurate detection of urinary pathogens by mobile ims-based electronic nose: a proof-of-principle study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272258/
https://www.ncbi.nlm.nih.gov/pubmed/25526592
http://dx.doi.org/10.1371/journal.pone.0114279
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