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Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by seque...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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The Korean Society for Laboratory Medicine
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272942/ https://www.ncbi.nlm.nih.gov/pubmed/25553292 http://dx.doi.org/10.3343/alm.2015.35.1.123 |
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author | Roh, Eun Youn In, Ji Won Shin, Sue Yoon, Jong Hyun Park, Kyoung Un Song, Eun Young |
author_facet | Roh, Eun Youn In, Ji Won Shin, Sue Yoon, Jong Hyun Park, Kyoung Un Song, Eun Young |
author_sort | Roh, Eun Youn |
collection | PubMed |
description | Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by sequence-based typing (SBT) using the AlleleSEQR HLA-DQB1 kit (Abbott Molecular, USA) in Korean individuals. No sample showed ambiguity in the assignment of 4-digit HLA-DQB1 allele with the LIFECODES HLA-DQB1 SSO typing kit, and the results were fully concordant with those of high-resolution typing of AlleleSEQR HLA-DQB1 SBT up to 4-digit level. Three samples required adjustment of false reactions (3/100, 3.0%): two samples with DQB1(*)03:03/(*)06:01 showed false-positive result in probe 253, and 1 sample with DQB1(*)04:02/(*)05:02 showed false-negative result in probe 217. We tested an additional sample with DQB1(*)03:03/(*)06:01, which showed same false-positivity in probe 253 and 2 samples with DQB1(*)04:02/(*)05:02, which showed no false reaction. The false reactions did not result in ambiguity or change in the HLA allele assignment. We could assign HLA-DQB1 alleles to 4 digit-level without ambiguity, with 100% concordance with the SBT results. Thus, LIFECODES HLA-DQB1 SSO typing kit showed good performance for intermediate-resolution HLA-DQB1 typing in clinical laboratory for organ transplantation in Koreans. |
format | Online Article Text |
id | pubmed-4272942 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | The Korean Society for Laboratory Medicine |
record_format | MEDLINE/PubMed |
spelling | pubmed-42729422015-01-01 Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans Roh, Eun Youn In, Ji Won Shin, Sue Yoon, Jong Hyun Park, Kyoung Un Song, Eun Young Ann Lab Med Brief Communication Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by sequence-based typing (SBT) using the AlleleSEQR HLA-DQB1 kit (Abbott Molecular, USA) in Korean individuals. No sample showed ambiguity in the assignment of 4-digit HLA-DQB1 allele with the LIFECODES HLA-DQB1 SSO typing kit, and the results were fully concordant with those of high-resolution typing of AlleleSEQR HLA-DQB1 SBT up to 4-digit level. Three samples required adjustment of false reactions (3/100, 3.0%): two samples with DQB1(*)03:03/(*)06:01 showed false-positive result in probe 253, and 1 sample with DQB1(*)04:02/(*)05:02 showed false-negative result in probe 217. We tested an additional sample with DQB1(*)03:03/(*)06:01, which showed same false-positivity in probe 253 and 2 samples with DQB1(*)04:02/(*)05:02, which showed no false reaction. The false reactions did not result in ambiguity or change in the HLA allele assignment. We could assign HLA-DQB1 alleles to 4 digit-level without ambiguity, with 100% concordance with the SBT results. Thus, LIFECODES HLA-DQB1 SSO typing kit showed good performance for intermediate-resolution HLA-DQB1 typing in clinical laboratory for organ transplantation in Koreans. The Korean Society for Laboratory Medicine 2015-01 2014-12-08 /pmc/articles/PMC4272942/ /pubmed/25553292 http://dx.doi.org/10.3343/alm.2015.35.1.123 Text en © The Korean Society for Laboratory Medicine. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Brief Communication Roh, Eun Youn In, Ji Won Shin, Sue Yoon, Jong Hyun Park, Kyoung Un Song, Eun Young Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title | Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title_full | Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title_fullStr | Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title_full_unstemmed | Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title_short | Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans |
title_sort | performance of lifecodes hla-dqb1 typing kit using luminex platform in koreans |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272942/ https://www.ncbi.nlm.nih.gov/pubmed/25553292 http://dx.doi.org/10.3343/alm.2015.35.1.123 |
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