Cargando…

Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans

Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by seque...

Descripción completa

Detalles Bibliográficos
Autores principales: Roh, Eun Youn, In, Ji Won, Shin, Sue, Yoon, Jong Hyun, Park, Kyoung Un, Song, Eun Young
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Korean Society for Laboratory Medicine 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272942/
https://www.ncbi.nlm.nih.gov/pubmed/25553292
http://dx.doi.org/10.3343/alm.2015.35.1.123
_version_ 1782349765568102400
author Roh, Eun Youn
In, Ji Won
Shin, Sue
Yoon, Jong Hyun
Park, Kyoung Un
Song, Eun Young
author_facet Roh, Eun Youn
In, Ji Won
Shin, Sue
Yoon, Jong Hyun
Park, Kyoung Un
Song, Eun Young
author_sort Roh, Eun Youn
collection PubMed
description Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by sequence-based typing (SBT) using the AlleleSEQR HLA-DQB1 kit (Abbott Molecular, USA) in Korean individuals. No sample showed ambiguity in the assignment of 4-digit HLA-DQB1 allele with the LIFECODES HLA-DQB1 SSO typing kit, and the results were fully concordant with those of high-resolution typing of AlleleSEQR HLA-DQB1 SBT up to 4-digit level. Three samples required adjustment of false reactions (3/100, 3.0%): two samples with DQB1(*)03:03/(*)06:01 showed false-positive result in probe 253, and 1 sample with DQB1(*)04:02/(*)05:02 showed false-negative result in probe 217. We tested an additional sample with DQB1(*)03:03/(*)06:01, which showed same false-positivity in probe 253 and 2 samples with DQB1(*)04:02/(*)05:02, which showed no false reaction. The false reactions did not result in ambiguity or change in the HLA allele assignment. We could assign HLA-DQB1 alleles to 4 digit-level without ambiguity, with 100% concordance with the SBT results. Thus, LIFECODES HLA-DQB1 SSO typing kit showed good performance for intermediate-resolution HLA-DQB1 typing in clinical laboratory for organ transplantation in Koreans.
format Online
Article
Text
id pubmed-4272942
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher The Korean Society for Laboratory Medicine
record_format MEDLINE/PubMed
spelling pubmed-42729422015-01-01 Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans Roh, Eun Youn In, Ji Won Shin, Sue Yoon, Jong Hyun Park, Kyoung Un Song, Eun Young Ann Lab Med Brief Communication Intermediate-resolution HLA-DQ typing has gained importance in organ transplantation recently. We evaluated the performance of the LIFECODES HLA-DQB1 typing kit (Immucor, USA) using sequence-specific oligonucleotide (SSO) probe and Luminex platform (Luminex Corp., USA) on 100 samples tested by sequence-based typing (SBT) using the AlleleSEQR HLA-DQB1 kit (Abbott Molecular, USA) in Korean individuals. No sample showed ambiguity in the assignment of 4-digit HLA-DQB1 allele with the LIFECODES HLA-DQB1 SSO typing kit, and the results were fully concordant with those of high-resolution typing of AlleleSEQR HLA-DQB1 SBT up to 4-digit level. Three samples required adjustment of false reactions (3/100, 3.0%): two samples with DQB1(*)03:03/(*)06:01 showed false-positive result in probe 253, and 1 sample with DQB1(*)04:02/(*)05:02 showed false-negative result in probe 217. We tested an additional sample with DQB1(*)03:03/(*)06:01, which showed same false-positivity in probe 253 and 2 samples with DQB1(*)04:02/(*)05:02, which showed no false reaction. The false reactions did not result in ambiguity or change in the HLA allele assignment. We could assign HLA-DQB1 alleles to 4 digit-level without ambiguity, with 100% concordance with the SBT results. Thus, LIFECODES HLA-DQB1 SSO typing kit showed good performance for intermediate-resolution HLA-DQB1 typing in clinical laboratory for organ transplantation in Koreans. The Korean Society for Laboratory Medicine 2015-01 2014-12-08 /pmc/articles/PMC4272942/ /pubmed/25553292 http://dx.doi.org/10.3343/alm.2015.35.1.123 Text en © The Korean Society for Laboratory Medicine. http://creativecommons.org/licenses/by-nc/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Communication
Roh, Eun Youn
In, Ji Won
Shin, Sue
Yoon, Jong Hyun
Park, Kyoung Un
Song, Eun Young
Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title_full Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title_fullStr Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title_full_unstemmed Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title_short Performance of LIFECODES HLA-DQB1 Typing Kit Using Luminex Platform in Koreans
title_sort performance of lifecodes hla-dqb1 typing kit using luminex platform in koreans
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4272942/
https://www.ncbi.nlm.nih.gov/pubmed/25553292
http://dx.doi.org/10.3343/alm.2015.35.1.123
work_keys_str_mv AT roheunyoun performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans
AT injiwon performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans
AT shinsue performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans
AT yoonjonghyun performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans
AT parkkyoungun performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans
AT songeunyoung performanceoflifecodeshladqb1typingkitusingluminexplatforminkoreans