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A statistical assessment of population trends for data deficient Mexican amphibians
Background. Mexico has the world’s fifth largest population of amphibians and the second country with the highest quantity of threatened amphibian species. About 10% of Mexican amphibians lack enough data to be assigned to a risk category by the IUCN, so in this paper we want to test a statistical t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273930/ https://www.ncbi.nlm.nih.gov/pubmed/25548736 http://dx.doi.org/10.7717/peerj.703 |
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author | Quintero, Esther Thessen, Anne E. Arias-Caballero, Paulina Ayala-Orozco, Bárbara |
author_facet | Quintero, Esther Thessen, Anne E. Arias-Caballero, Paulina Ayala-Orozco, Bárbara |
author_sort | Quintero, Esther |
collection | PubMed |
description | Background. Mexico has the world’s fifth largest population of amphibians and the second country with the highest quantity of threatened amphibian species. About 10% of Mexican amphibians lack enough data to be assigned to a risk category by the IUCN, so in this paper we want to test a statistical tool that, in the absence of specific demographic data, can assess a species’ risk of extinction, population trend, and to better understand which variables increase their vulnerability. Recent studies have demonstrated that the risk of species decline depends on extrinsic and intrinsic traits, thus including both of them for assessing extinction might render more accurate assessment of threats. Methods. We harvested data from the Encyclopedia of Life (EOL) and the published literature for Mexican amphibians, and used these data to assess the population trend of some of the Mexican species that have been assigned to the Data Deficient category of the IUCN using Random Forests, a Machine Learning method that gives a prediction of complex processes and identifies the most important variables that account for the predictions. Results. Our results show that most of the data deficient Mexican amphibians that we used have decreasing population trends. We found that Random Forests is a solid way to identify species with decreasing population trends when no demographic data is available. Moreover, we point to the most important variables that make species more vulnerable for extinction. This exercise is a very valuable first step in assigning conservation priorities for poorly known species. |
format | Online Article Text |
id | pubmed-4273930 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-42739302014-12-29 A statistical assessment of population trends for data deficient Mexican amphibians Quintero, Esther Thessen, Anne E. Arias-Caballero, Paulina Ayala-Orozco, Bárbara PeerJ Biodiversity Background. Mexico has the world’s fifth largest population of amphibians and the second country with the highest quantity of threatened amphibian species. About 10% of Mexican amphibians lack enough data to be assigned to a risk category by the IUCN, so in this paper we want to test a statistical tool that, in the absence of specific demographic data, can assess a species’ risk of extinction, population trend, and to better understand which variables increase their vulnerability. Recent studies have demonstrated that the risk of species decline depends on extrinsic and intrinsic traits, thus including both of them for assessing extinction might render more accurate assessment of threats. Methods. We harvested data from the Encyclopedia of Life (EOL) and the published literature for Mexican amphibians, and used these data to assess the population trend of some of the Mexican species that have been assigned to the Data Deficient category of the IUCN using Random Forests, a Machine Learning method that gives a prediction of complex processes and identifies the most important variables that account for the predictions. Results. Our results show that most of the data deficient Mexican amphibians that we used have decreasing population trends. We found that Random Forests is a solid way to identify species with decreasing population trends when no demographic data is available. Moreover, we point to the most important variables that make species more vulnerable for extinction. This exercise is a very valuable first step in assigning conservation priorities for poorly known species. PeerJ Inc. 2014-12-16 /pmc/articles/PMC4273930/ /pubmed/25548736 http://dx.doi.org/10.7717/peerj.703 Text en © 2014 Quintero et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Biodiversity Quintero, Esther Thessen, Anne E. Arias-Caballero, Paulina Ayala-Orozco, Bárbara A statistical assessment of population trends for data deficient Mexican amphibians |
title | A statistical assessment of population trends for data deficient Mexican amphibians |
title_full | A statistical assessment of population trends for data deficient Mexican amphibians |
title_fullStr | A statistical assessment of population trends for data deficient Mexican amphibians |
title_full_unstemmed | A statistical assessment of population trends for data deficient Mexican amphibians |
title_short | A statistical assessment of population trends for data deficient Mexican amphibians |
title_sort | statistical assessment of population trends for data deficient mexican amphibians |
topic | Biodiversity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273930/ https://www.ncbi.nlm.nih.gov/pubmed/25548736 http://dx.doi.org/10.7717/peerj.703 |
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