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Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots
BACKGROUND: Identification of individual components in complex mixtures is an important and sometimes daunting task in several research areas like metabolomics and natural product studies. NMR spectroscopy is an excellent technique for analysis of mixtures of organic compounds and gives a detailed c...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4274720/ https://www.ncbi.nlm.nih.gov/pubmed/25511422 http://dx.doi.org/10.1186/s12859-014-0413-z |
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author | Öman, Tommy Tessem, May-Britt Bathen, Tone F Bertilsson, Helena Angelsen, Anders Hedenström, Mattias Andreassen, Trygve |
author_facet | Öman, Tommy Tessem, May-Britt Bathen, Tone F Bertilsson, Helena Angelsen, Anders Hedenström, Mattias Andreassen, Trygve |
author_sort | Öman, Tommy |
collection | PubMed |
description | BACKGROUND: Identification of individual components in complex mixtures is an important and sometimes daunting task in several research areas like metabolomics and natural product studies. NMR spectroscopy is an excellent technique for analysis of mixtures of organic compounds and gives a detailed chemical fingerprint of most individual components above the detection limit. For the identification of individual metabolites in metabolomics, correlation or covariance between peaks in (1)H NMR spectra has previously been successfully employed. Similar correlation of 2D (1)H-(13)C Heteronuclear Single Quantum Correlation spectra was recently applied to investigate the structure of heparine. In this paper, we demonstrate how a similar approach can be used to identify metabolites in human biofluids (post-prostatic palpation urine). RESULTS: From 50 (1)H-(13)C Heteronuclear Single Quantum Correlation spectra, 23 correlation plots resembling pure metabolites were constructed. The identities of these metabolites were confirmed by comparing the correlation plots with reported NMR data, mostly from the Human Metabolome Database. CONCLUSIONS: Correlation plots prepared by statistically correlating (1)H-(13)C Heteronuclear Single Quantum Correlation spectra from human biofluids provide unambiguous identification of metabolites. The correlation plots highlight cross-peaks belonging to each individual compound, not limited by long-range magnetization transfer as conventional NMR experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-014-0413-z) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4274720 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-42747202015-01-02 Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots Öman, Tommy Tessem, May-Britt Bathen, Tone F Bertilsson, Helena Angelsen, Anders Hedenström, Mattias Andreassen, Trygve BMC Bioinformatics Methodology Article BACKGROUND: Identification of individual components in complex mixtures is an important and sometimes daunting task in several research areas like metabolomics and natural product studies. NMR spectroscopy is an excellent technique for analysis of mixtures of organic compounds and gives a detailed chemical fingerprint of most individual components above the detection limit. For the identification of individual metabolites in metabolomics, correlation or covariance between peaks in (1)H NMR spectra has previously been successfully employed. Similar correlation of 2D (1)H-(13)C Heteronuclear Single Quantum Correlation spectra was recently applied to investigate the structure of heparine. In this paper, we demonstrate how a similar approach can be used to identify metabolites in human biofluids (post-prostatic palpation urine). RESULTS: From 50 (1)H-(13)C Heteronuclear Single Quantum Correlation spectra, 23 correlation plots resembling pure metabolites were constructed. The identities of these metabolites were confirmed by comparing the correlation plots with reported NMR data, mostly from the Human Metabolome Database. CONCLUSIONS: Correlation plots prepared by statistically correlating (1)H-(13)C Heteronuclear Single Quantum Correlation spectra from human biofluids provide unambiguous identification of metabolites. The correlation plots highlight cross-peaks belonging to each individual compound, not limited by long-range magnetization transfer as conventional NMR experiments. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12859-014-0413-z) contains supplementary material, which is available to authorized users. BioMed Central 2014-12-16 /pmc/articles/PMC4274720/ /pubmed/25511422 http://dx.doi.org/10.1186/s12859-014-0413-z Text en © Öman et al.; licensee BioMed Central. 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Article Öman, Tommy Tessem, May-Britt Bathen, Tone F Bertilsson, Helena Angelsen, Anders Hedenström, Mattias Andreassen, Trygve Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title | Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title_full | Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title_fullStr | Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title_full_unstemmed | Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title_short | Identification of metabolites from 2D (1)H-(13)C HSQC NMR using peak correlation plots |
title_sort | identification of metabolites from 2d (1)h-(13)c hsqc nmr using peak correlation plots |
topic | Methodology Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4274720/ https://www.ncbi.nlm.nih.gov/pubmed/25511422 http://dx.doi.org/10.1186/s12859-014-0413-z |
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