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Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales

Recent studies have emphasized the importance of multiplex networks – interdependent networks with shared nodes and different types of connections – in systems primarily outside of neuroscience. Though the multiplex properties of networks are frequently not considered, most networks are actually mul...

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Autores principales: Timme, Nicholas, Ito, Shinya, Myroshnychenko, Maxym, Yeh, Fang-Chin, Hiolski, Emma, Hottowy, Pawel, Beggs, John M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275261/
https://www.ncbi.nlm.nih.gov/pubmed/25536059
http://dx.doi.org/10.1371/journal.pone.0115764
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author Timme, Nicholas
Ito, Shinya
Myroshnychenko, Maxym
Yeh, Fang-Chin
Hiolski, Emma
Hottowy, Pawel
Beggs, John M.
author_facet Timme, Nicholas
Ito, Shinya
Myroshnychenko, Maxym
Yeh, Fang-Chin
Hiolski, Emma
Hottowy, Pawel
Beggs, John M.
author_sort Timme, Nicholas
collection PubMed
description Recent studies have emphasized the importance of multiplex networks – interdependent networks with shared nodes and different types of connections – in systems primarily outside of neuroscience. Though the multiplex properties of networks are frequently not considered, most networks are actually multiplex networks and the multiplex specific features of networks can greatly affect network behavior (e.g. fault tolerance). Thus, the study of networks of neurons could potentially be greatly enhanced using a multiplex perspective. Given the wide range of temporally dependent rhythms and phenomena present in neural systems, we chose to examine multiplex networks of individual neurons with time scale dependent connections. To study these networks, we used transfer entropy – an information theoretic quantity that can be used to measure linear and nonlinear interactions – to systematically measure the connectivity between individual neurons at different time scales in cortical and hippocampal slice cultures. We recorded the spiking activity of almost 12,000 neurons across 60 tissue samples using a 512-electrode array with 60 micrometer inter-electrode spacing and 50 microsecond temporal resolution. To the best of our knowledge, this preparation and recording method represents a superior combination of number of recorded neurons and temporal and spatial recording resolutions to any currently available in vivo system. We found that highly connected neurons (“hubs”) were localized to certain time scales, which, we hypothesize, increases the fault tolerance of the network. Conversely, a large proportion of non-hub neurons were not localized to certain time scales. In addition, we found that long and short time scale connectivity was uncorrelated. Finally, we found that long time scale networks were significantly less modular and more disassortative than short time scale networks in both tissue types. As far as we are aware, this analysis represents the first systematic study of temporally dependent multiplex networks among individual neurons.
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spelling pubmed-42752612014-12-31 Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales Timme, Nicholas Ito, Shinya Myroshnychenko, Maxym Yeh, Fang-Chin Hiolski, Emma Hottowy, Pawel Beggs, John M. PLoS One Research Article Recent studies have emphasized the importance of multiplex networks – interdependent networks with shared nodes and different types of connections – in systems primarily outside of neuroscience. Though the multiplex properties of networks are frequently not considered, most networks are actually multiplex networks and the multiplex specific features of networks can greatly affect network behavior (e.g. fault tolerance). Thus, the study of networks of neurons could potentially be greatly enhanced using a multiplex perspective. Given the wide range of temporally dependent rhythms and phenomena present in neural systems, we chose to examine multiplex networks of individual neurons with time scale dependent connections. To study these networks, we used transfer entropy – an information theoretic quantity that can be used to measure linear and nonlinear interactions – to systematically measure the connectivity between individual neurons at different time scales in cortical and hippocampal slice cultures. We recorded the spiking activity of almost 12,000 neurons across 60 tissue samples using a 512-electrode array with 60 micrometer inter-electrode spacing and 50 microsecond temporal resolution. To the best of our knowledge, this preparation and recording method represents a superior combination of number of recorded neurons and temporal and spatial recording resolutions to any currently available in vivo system. We found that highly connected neurons (“hubs”) were localized to certain time scales, which, we hypothesize, increases the fault tolerance of the network. Conversely, a large proportion of non-hub neurons were not localized to certain time scales. In addition, we found that long and short time scale connectivity was uncorrelated. Finally, we found that long time scale networks were significantly less modular and more disassortative than short time scale networks in both tissue types. As far as we are aware, this analysis represents the first systematic study of temporally dependent multiplex networks among individual neurons. Public Library of Science 2014-12-23 /pmc/articles/PMC4275261/ /pubmed/25536059 http://dx.doi.org/10.1371/journal.pone.0115764 Text en © 2014 Timme et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Timme, Nicholas
Ito, Shinya
Myroshnychenko, Maxym
Yeh, Fang-Chin
Hiolski, Emma
Hottowy, Pawel
Beggs, John M.
Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title_full Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title_fullStr Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title_full_unstemmed Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title_short Multiplex Networks of Cortical and Hippocampal Neurons Revealed at Different Timescales
title_sort multiplex networks of cortical and hippocampal neurons revealed at different timescales
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275261/
https://www.ncbi.nlm.nih.gov/pubmed/25536059
http://dx.doi.org/10.1371/journal.pone.0115764
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