Cargando…

Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens

DNA barcoding is an efficient method to identify specimens and to detect undescribed/cryptic species. Sanger sequencing of individual specimens is the standard approach in generating large-scale DNA barcode libraries and identifying unknowns. However, the Sanger sequencing technology is, in some res...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shokralla, Shadi, Gibson, Joel F, Nikbakht, Hamid, Janzen, Daniel H, Hallwachs, Winnie, Hajibabaei, Mehrdad
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BlackWell Publishing Ltd 2014
Materias:	Resource Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4276293/ https://www.ncbi.nlm.nih.gov/pubmed/24641208 http://dx.doi.org/10.1111/1755-0998.12236

Ejemplares similares

Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens
por: Shokralla, Shadi, et al.
Publicado: (2011)

Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
por: Hajibabaei, Mehrdad, et al.
Publicado: (2011)

Rapid and accurate taxonomic classification of insect (class Insecta) cytochrome c oxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
por: Porter, Teresita M, et al.
Publicado: (2014)

Mitochondrial and nuclear phylogenetic analysis with Sanger and next-generation sequencing shows that, in Área de Conservación Guanacaste, northwestern Costa Rica, the skipper butterfly named Urbanus belli (family Hesperiidae) comprises three morphologically cryptic species
por: Bertrand, Claudia, et al.
Publicado: (2014)

A DNA Mini-Barcoding System for Authentication of Processed Fish Products
por: Shokralla, Shadi, et al.
Publicado: (2015)

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform
por: Shokralla, Shadi, et al.
Publicado: (2015)

Advancing taxonomy and bioinventories with DNA barcodes
por: Miller, Scott E., et al.
Publicado: (2016)

Using Next-Generation Sequencing for DNA Barcoding: Capturing Allelic Variation in ITS2
por: Batovska, Jana, et al.
Publicado: (2016)

Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents
por: McClenaghan, Beverly, et al.
Publicado: (2015)

Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
por: Hajibabaei, Mehrdad, et al.
Publicado: (2012)

Short Barcodes for Next Generation Sequencing
por: Mir, Katharina, et al.
Publicado: (2013)

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths
por: Wilson, John James, et al.
Publicado: (2011)

Evaluating next‐generation sequencing (NGS) methods for routine monitoring of wild bees: Metabarcoding, mitogenomics or NGS barcoding
por: Gueuning, Morgan, et al.
Publicado: (2019)

Our love-hate relationship with DNA barcodes, the Y2K problem, and the search for next generation barcodes
por: Marcus, Jeffrey M.
Publicado: (2018)

Joining Inventory by Parataxonomists with DNA Barcoding of a Large Complex Tropical Conserved Wildland in Northwestern Costa Rica
por: Janzen, Daniel H., et al.
Publicado: (2011)

One species in eight: DNA barcodes from type specimens resolve a taxonomic quagmire
por: Mutanen, Marko, et al.
Publicado: (2015)

Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring
por: Hajibabaei, Mehrdad, et al.
Publicado: (2007)

Replacing Sanger with Next Generation Sequencing to improve coverage and quality of reference DNA barcodes for plants
por: Wilkinson, Mike J., et al.
Publicado: (2017)

Wolbachia and DNA Barcoding Insects: Patterns, Potential, and Problems
por: Smith, M. Alex, et al.
Publicado: (2012)

FLEXBAR—Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms
por: Dodt, Matthias, et al.
Publicado: (2012)

A universal DNA mini-barcode for biodiversity analysis
por: Meusnier, Isabelle, et al.
Publicado: (2008)

A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
por: Binh, Hoang Thi, et al.
Publicado: (2018)

An Improved Barcoded Oligonucleotide Primers-based Next-generation Sequencing Approach for Direct Identification of Viral Pathogens in Clinical Specimens
por: WANG, Chun Hua, et al.
Publicado: (2017)

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses
por: Moser, Lindsey A., et al.
Publicado: (2016)

Efficient isolation of rare B cells using next-generation antigen barcoding
por: Hurtado, Jonathan, et al.
Publicado: (2023)

Life barcoded by DNA barcodes
por: Guo, Mali, et al.
Publicado: (2022)

DNA barcode-based delineation of putative species: efficient start for taxonomic workflows
por: Kekkonen, Mari, et al.
Publicado: (2014)

In vivo generation of DNA sequence diversity for cellular barcoding
por: Peikon, Ian D., et al.
Publicado: (2014)

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
por: Robideau, Gregg P, et al.
Publicado: (2011)

DNA barcode analysis of butterfly species from Pakistan points towards regional endemism
por: Ashfaq, Muhammad, et al.
Publicado: (2013)

Barcode-free next-generation sequencing error validation for ultra-rare variant detection
por: Yeom, Huiran, et al.
Publicado: (2019)

Genome skimming herbarium specimens for DNA barcoding and phylogenomics
por: Zeng, Chun-Xia, et al.
Publicado: (2018)

The application of next-generation sequence-based DNA barcoding for bloodmeal detection in host-seeking wild-caught Ixodes scapularis nymphs
por: Lumsden, G. A., et al.
Publicado: (2021)

Next-generation plasmids for transgenesis in zebrafish and beyond
por: Kemmler, Cassie L., et al.
Publicado: (2023)

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers
por: Fahner, Nicole A., et al.
Publicado: (2016)

A practical comparison of the next-generation sequencing platform and assemblers using yeast genome
por: Jeon, Min-Seung, et al.
Publicado: (2023)

Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence
por: Deakin, Claire T., et al.
Publicado: (2014)

Next-Generation Sequencing for Rodent Barcoding: Species Identification from Fresh, Degraded and Environmental Samples
por: Galan, Maxime, et al.
Publicado: (2012)

Multiplex profiling of serum proteins in solution using barcoded antibody fragments and next generation sequencing
por: Brofelth, Mattias, et al.
Publicado: (2020)

Ultrasensitive amplicon barcoding for next-generation sequencing facilitating sequence error and amplification-bias correction
por: Ahmed, Ibrahim, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_ojtqm7tofcj47kp32cta1pq177