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Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories

In an era of biodiversity crisis, arthropods have great potential to inform conservation assessment and test hypotheses about community assembly. This is because their relatively narrow geographic distributions and high diversity offer high-resolution data on landscape-scale patterns of biodiversity...

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Autores principales: Miller, Jeremy A., Miller, Joshua H., Pham, Dinh-Sac, Beentjes, Kevin K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277369/
https://www.ncbi.nlm.nih.gov/pubmed/25541974
http://dx.doi.org/10.1371/journal.pone.0115750
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author Miller, Jeremy A.
Miller, Joshua H.
Pham, Dinh-Sac
Beentjes, Kevin K.
author_facet Miller, Jeremy A.
Miller, Joshua H.
Pham, Dinh-Sac
Beentjes, Kevin K.
author_sort Miller, Jeremy A.
collection PubMed
description In an era of biodiversity crisis, arthropods have great potential to inform conservation assessment and test hypotheses about community assembly. This is because their relatively narrow geographic distributions and high diversity offer high-resolution data on landscape-scale patterns of biodiversity. However, a major impediment to the more widespread application of arthropod data to a range of scientific and policy questions is the poor state of modern arthropod taxonomy, especially in the tropics. Inventories of spiders and other megadiverse arthropods from tropical forests are dominated by undescribed species. Such studies typically organize their data using morphospecies codes, which make it difficult for data from independent inventories to be compared and combined. To combat this shortcoming, we offer cyberdiversity, an online community-based approach for reconciling results of independent inventory studies where current taxonomic knowledge is incomplete. Participating scientists can upload images and DNA barcode sequences to dedicated databases and submit occurrence data and links to a web site (www.digitalSpiders.org). Taxonomic determinations can be shared with a crowdsourcing comments feature, and researchers can discover specimens of interest available for loan and request aliquots of genomic DNA extract. To demonstrate the value of the cyberdiversity framework, we reconcile data from three rapid structured inventories of spiders conducted in Vietnam with an independent inventory (Doi Inthanon, Thailand) using online image libraries. Species richness and inventory completeness were assessed using non-parametric estimators. Community similarity was evaluated using a novel index based on the Jaccard replacing observed with estimated values to correct for unobserved species. We use a distance-decay framework to demonstrate a rudimentary model of landscape-scale changes in community composition that will become increasingly informative as additional inventories participate. With broader adoption of the cyberdiversity approach, networks of information-sharing taxonomists can more efficiently and effectively address taxonomic impediments while elucidating landscape scale patterns of biodiversity.
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spelling pubmed-42773692014-12-31 Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories Miller, Jeremy A. Miller, Joshua H. Pham, Dinh-Sac Beentjes, Kevin K. PLoS One Research Article In an era of biodiversity crisis, arthropods have great potential to inform conservation assessment and test hypotheses about community assembly. This is because their relatively narrow geographic distributions and high diversity offer high-resolution data on landscape-scale patterns of biodiversity. However, a major impediment to the more widespread application of arthropod data to a range of scientific and policy questions is the poor state of modern arthropod taxonomy, especially in the tropics. Inventories of spiders and other megadiverse arthropods from tropical forests are dominated by undescribed species. Such studies typically organize their data using morphospecies codes, which make it difficult for data from independent inventories to be compared and combined. To combat this shortcoming, we offer cyberdiversity, an online community-based approach for reconciling results of independent inventory studies where current taxonomic knowledge is incomplete. Participating scientists can upload images and DNA barcode sequences to dedicated databases and submit occurrence data and links to a web site (www.digitalSpiders.org). Taxonomic determinations can be shared with a crowdsourcing comments feature, and researchers can discover specimens of interest available for loan and request aliquots of genomic DNA extract. To demonstrate the value of the cyberdiversity framework, we reconcile data from three rapid structured inventories of spiders conducted in Vietnam with an independent inventory (Doi Inthanon, Thailand) using online image libraries. Species richness and inventory completeness were assessed using non-parametric estimators. Community similarity was evaluated using a novel index based on the Jaccard replacing observed with estimated values to correct for unobserved species. We use a distance-decay framework to demonstrate a rudimentary model of landscape-scale changes in community composition that will become increasingly informative as additional inventories participate. With broader adoption of the cyberdiversity approach, networks of information-sharing taxonomists can more efficiently and effectively address taxonomic impediments while elucidating landscape scale patterns of biodiversity. Public Library of Science 2014-12-26 /pmc/articles/PMC4277369/ /pubmed/25541974 http://dx.doi.org/10.1371/journal.pone.0115750 Text en © 2014 Miller et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Miller, Jeremy A.
Miller, Joshua H.
Pham, Dinh-Sac
Beentjes, Kevin K.
Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title_full Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title_fullStr Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title_full_unstemmed Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title_short Cyberdiversity: Improving the Informatic Value of Diverse Tropical Arthropod Inventories
title_sort cyberdiversity: improving the informatic value of diverse tropical arthropod inventories
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277369/
https://www.ncbi.nlm.nih.gov/pubmed/25541974
http://dx.doi.org/10.1371/journal.pone.0115750
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