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One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick

[Image: see text] Here, we present a universal, simple, efficient, and reliable way to add small BioBrick parts to any BioBrick via PCR that is compatible with BioBrick assembly standard 10. As a proof of principle, we have designed a universal primer, rbs_B0034, that contains a ribosomal binding si...

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Autores principales: Bryksin, Anton V., Bachman, Haylee N., Cooper, Spencer W., Balavijayan, Tilak, Blackstone, Rachael M., Du, Haoli, Jenkins, Jackson P., Haynes, Casey L., Siemer, Jessica L., Fiore, Vincent F., Barker, Thomas H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277749/
https://www.ncbi.nlm.nih.gov/pubmed/25524097
http://dx.doi.org/10.1021/sb500047r
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author Bryksin, Anton V.
Bachman, Haylee N.
Cooper, Spencer W.
Balavijayan, Tilak
Blackstone, Rachael M.
Du, Haoli
Jenkins, Jackson P.
Haynes, Casey L.
Siemer, Jessica L.
Fiore, Vincent F.
Barker, Thomas H.
author_facet Bryksin, Anton V.
Bachman, Haylee N.
Cooper, Spencer W.
Balavijayan, Tilak
Blackstone, Rachael M.
Du, Haoli
Jenkins, Jackson P.
Haynes, Casey L.
Siemer, Jessica L.
Fiore, Vincent F.
Barker, Thomas H.
author_sort Bryksin, Anton V.
collection PubMed
description [Image: see text] Here, we present a universal, simple, efficient, and reliable way to add small BioBrick parts to any BioBrick via PCR that is compatible with BioBrick assembly standard 10. As a proof of principle, we have designed a universal primer, rbs_B0034, that contains a ribosomal binding site (RBS; BBa_B0034) and that can be used in PCR to amplify any coding BioBrick that starts with ATG. We performed test PCRs with rbs_B0034 on 31 different targets and found it to be 93.6% efficient. Moreover, when supplemented with a complementary primer, addition of RBS can be accomplished via whole plasmid site-directed mutagenesis, thus reducing the time required for further assembly of composite parts. The described method brings simplicity to the addition of small parts, such as regulatory elements to existing BioBricks. The final product of the PCR assembly is indistinguishable from the standard or 3A BioBrick assembly.
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spelling pubmed-42777492015-12-19 One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick Bryksin, Anton V. Bachman, Haylee N. Cooper, Spencer W. Balavijayan, Tilak Blackstone, Rachael M. Du, Haoli Jenkins, Jackson P. Haynes, Casey L. Siemer, Jessica L. Fiore, Vincent F. Barker, Thomas H. ACS Synth Biol [Image: see text] Here, we present a universal, simple, efficient, and reliable way to add small BioBrick parts to any BioBrick via PCR that is compatible with BioBrick assembly standard 10. As a proof of principle, we have designed a universal primer, rbs_B0034, that contains a ribosomal binding site (RBS; BBa_B0034) and that can be used in PCR to amplify any coding BioBrick that starts with ATG. We performed test PCRs with rbs_B0034 on 31 different targets and found it to be 93.6% efficient. Moreover, when supplemented with a complementary primer, addition of RBS can be accomplished via whole plasmid site-directed mutagenesis, thus reducing the time required for further assembly of composite parts. The described method brings simplicity to the addition of small parts, such as regulatory elements to existing BioBricks. The final product of the PCR assembly is indistinguishable from the standard or 3A BioBrick assembly. American Chemical Society 2014-12-19 2014-12-19 /pmc/articles/PMC4277749/ /pubmed/25524097 http://dx.doi.org/10.1021/sb500047r Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Bryksin, Anton V.
Bachman, Haylee N.
Cooper, Spencer W.
Balavijayan, Tilak
Blackstone, Rachael M.
Du, Haoli
Jenkins, Jackson P.
Haynes, Casey L.
Siemer, Jessica L.
Fiore, Vincent F.
Barker, Thomas H.
One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title_full One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title_fullStr One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title_full_unstemmed One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title_short One Primer To Rule Them All: Universal Primer That Adds BBa_B0034 Ribosomal Binding Site to Any Coding Standard 10 BioBrick
title_sort one primer to rule them all: universal primer that adds bba_b0034 ribosomal binding site to any coding standard 10 biobrick
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4277749/
https://www.ncbi.nlm.nih.gov/pubmed/25524097
http://dx.doi.org/10.1021/sb500047r
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