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BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions

BACKGROUND: Centralized silos of genomic data are architecturally easier to initially design, develop and deploy than distributed models. However, as interoperability pains in EHR/EMR, HIE and other collaboration-centric life sciences domains have taught us, the core challenge of networking genomics...

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Autores principales: Lee, Preston V, Dinu, Valentin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280033/
https://www.ncbi.nlm.nih.gov/pubmed/25528455
http://dx.doi.org/10.1186/s12859-014-0424-9
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author Lee, Preston V
Dinu, Valentin
author_facet Lee, Preston V
Dinu, Valentin
author_sort Lee, Preston V
collection PubMed
description BACKGROUND: Centralized silos of genomic data are architecturally easier to initially design, develop and deploy than distributed models. However, as interoperability pains in EHR/EMR, HIE and other collaboration-centric life sciences domains have taught us, the core challenge of networking genomics systems is not in the construction of individual silos, but the interoperability of those deployments in a manner embracing the heterogeneous needs, terms and infrastructure of collaborating parties. This article demonstrates the adaptation of BitTorrent to private collaboration networks in an authenticated, authorized and encrypted manner while retaining the same characteristics of standard BitTorrent. RESULTS: The BitTorious portal was sucessfully used to manage many concurrent domestic Bittorrent clients across the United States: exchanging genomics data payloads in excess of 500GiB using the uTorrent client software on Linux, OSX and Windows platforms. Individual nodes were sporadically interrupted to verify the resilience of the system to outages of a single client node as well as recovery of nodes resuming operation on intermittent Internet connections. CONCLUSIONS: The authorization-based extension of Bittorrent and accompanying BitTorious reference tracker and user management web portal provide a free, standards-based, general purpose and extensible data distribution system for large ‘omics collaborations.
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spelling pubmed-42800332014-12-31 BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions Lee, Preston V Dinu, Valentin BMC Bioinformatics Software BACKGROUND: Centralized silos of genomic data are architecturally easier to initially design, develop and deploy than distributed models. However, as interoperability pains in EHR/EMR, HIE and other collaboration-centric life sciences domains have taught us, the core challenge of networking genomics systems is not in the construction of individual silos, but the interoperability of those deployments in a manner embracing the heterogeneous needs, terms and infrastructure of collaborating parties. This article demonstrates the adaptation of BitTorrent to private collaboration networks in an authenticated, authorized and encrypted manner while retaining the same characteristics of standard BitTorrent. RESULTS: The BitTorious portal was sucessfully used to manage many concurrent domestic Bittorrent clients across the United States: exchanging genomics data payloads in excess of 500GiB using the uTorrent client software on Linux, OSX and Windows platforms. Individual nodes were sporadically interrupted to verify the resilience of the system to outages of a single client node as well as recovery of nodes resuming operation on intermittent Internet connections. CONCLUSIONS: The authorization-based extension of Bittorrent and accompanying BitTorious reference tracker and user management web portal provide a free, standards-based, general purpose and extensible data distribution system for large ‘omics collaborations. BioMed Central 2014-12-21 /pmc/articles/PMC4280033/ /pubmed/25528455 http://dx.doi.org/10.1186/s12859-014-0424-9 Text en © Lee and Dinu; licensee BioMed Central. 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Lee, Preston V
Dinu, Valentin
BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title_full BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title_fullStr BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title_full_unstemmed BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title_short BitTorious: global controlled genomics data publication, research and archiving via BitTorrent extensions
title_sort bittorious: global controlled genomics data publication, research and archiving via bittorrent extensions
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280033/
https://www.ncbi.nlm.nih.gov/pubmed/25528455
http://dx.doi.org/10.1186/s12859-014-0424-9
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