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Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers

[Image: see text] Mean-field methods, such as the Poisson–Boltzmann equation (PBE), are often used to calculate the electrostatic properties of molecular systems. In the past two decades, an enhancement of the PBE, the size-modified Poisson–Boltzmann equation (SMPBE), has been reported. Here, the PB...

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Autores principales: Wang, Nuo, Zhou, Shenggao, Kekenes-Huskey, Peter M., Li, Bo, McCammon, J. Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280115/
https://www.ncbi.nlm.nih.gov/pubmed/25426875
http://dx.doi.org/10.1021/jp511702w
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author Wang, Nuo
Zhou, Shenggao
Kekenes-Huskey, Peter M.
Li, Bo
McCammon, J. Andrew
author_facet Wang, Nuo
Zhou, Shenggao
Kekenes-Huskey, Peter M.
Li, Bo
McCammon, J. Andrew
author_sort Wang, Nuo
collection PubMed
description [Image: see text] Mean-field methods, such as the Poisson–Boltzmann equation (PBE), are often used to calculate the electrostatic properties of molecular systems. In the past two decades, an enhancement of the PBE, the size-modified Poisson–Boltzmann equation (SMPBE), has been reported. Here, the PBE and the SMPBE are reevaluated for realistic molecular systems, namely, lipid bilayers, under eight different sets of input parameters. The SMPBE appears to reproduce the molecular dynamics simulation results better than the PBE only under specific parameter sets, but in general, it performs no better than the Stern layer correction of the PBE. These results emphasize the need for careful discussions of the accuracy of mean-field calculations on realistic systems with respect to the choice of parameters and call for reconsideration of the cost-efficiency and the significance of the current SMPBE formulation.
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spelling pubmed-42801152015-11-26 Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers Wang, Nuo Zhou, Shenggao Kekenes-Huskey, Peter M. Li, Bo McCammon, J. Andrew J Phys Chem B [Image: see text] Mean-field methods, such as the Poisson–Boltzmann equation (PBE), are often used to calculate the electrostatic properties of molecular systems. In the past two decades, an enhancement of the PBE, the size-modified Poisson–Boltzmann equation (SMPBE), has been reported. Here, the PBE and the SMPBE are reevaluated for realistic molecular systems, namely, lipid bilayers, under eight different sets of input parameters. The SMPBE appears to reproduce the molecular dynamics simulation results better than the PBE only under specific parameter sets, but in general, it performs no better than the Stern layer correction of the PBE. These results emphasize the need for careful discussions of the accuracy of mean-field calculations on realistic systems with respect to the choice of parameters and call for reconsideration of the cost-efficiency and the significance of the current SMPBE formulation. American Chemical Society 2014-11-26 2014-12-26 /pmc/articles/PMC4280115/ /pubmed/25426875 http://dx.doi.org/10.1021/jp511702w Text en Copyright © 2014 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Wang, Nuo
Zhou, Shenggao
Kekenes-Huskey, Peter M.
Li, Bo
McCammon, J. Andrew
Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title_full Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title_fullStr Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title_full_unstemmed Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title_short Poisson–Boltzmann versus Size-Modified Poisson–Boltzmann Electrostatics Applied to Lipid Bilayers
title_sort poisson–boltzmann versus size-modified poisson–boltzmann electrostatics applied to lipid bilayers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4280115/
https://www.ncbi.nlm.nih.gov/pubmed/25426875
http://dx.doi.org/10.1021/jp511702w
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